RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 NCAPHQ15003 741 aa24.44■■□□□ 1.5
COL18A1-207ENST00000473212 CCDC150Q8NCX0 1101 aa24.44■■□□□ 1.5
COL18A1-207ENST00000473212 TTLL11Q8NHH1 800 aa24.44■■□□□ 1.5
COL18A1-207ENST00000473212 SFPQP23246 707 aaKnown RBP eCLIP24.43■■□□□ 1.5
COL18A1-207ENST00000473212 LRRFIP1Q32MZ4 808 aaKnown RBP24.43■■□□□ 1.5
COL18A1-207ENST00000473212 SHANK3Q9BYB0 1731 aa24.43■■□□□ 1.5
COL18A1-207ENST00000473212 KIF2AO00139 706 aaPredicted RBP24.43■■□□□ 1.5
COL18A1-207ENST00000473212 ADD2P35612 726 aa24.43■■□□□ 1.5
COL18A1-207ENST00000473212 FBXO38Q6PIJ6 1188 aa24.43■■□□□ 1.5
COL18A1-207ENST00000473212 CLIC6Q96NY7 704 aa24.43■■□□□ 1.5
COL18A1-207ENST00000473212 PAPPAQ13219 1627 aa24.43■■□□□ 1.5
COL18A1-207ENST00000473212 NPHP1O15259 732 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 ATP1A3P13637 1013 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 TPM4P67936 248 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 KIF6Q6ZMV9 814 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 CNNM1Q9NRU3 951 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 TOGARAM1Q9Y4F4 1720 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 LMOD1P29536 600 aaPredicted RBP24.42■■□□□ 1.5
COL18A1-207ENST00000473212 ALG1Q9BT22 464 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 MYH7P12883 1935 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 ZNF532Q9HCE3 1301 aa24.42■■□□□ 1.5
COL18A1-207ENST00000473212 CMA1P23946 247 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 VPS37DQ86XT2 251 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 STK11IPQ8N1F8 1099 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 TACC3Q9Y6A5 838 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 C4AP0C0L4 1744 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 C4BP0C0L5 1744 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 SYT10Q6XYQ8 523 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 NLRP10Q86W26 655 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 DCCP43146 1447 aa24.41■■□□□ 1.5
COL18A1-207ENST00000473212 METAP2P50579 478 aaKnown RBP eCLIP24.4■■□□□ 1.57e-7■□□□□ 10.6
COL18A1-207ENST00000473212 SLC4A9Q96Q91 983 aa24.4■■□□□ 1.5
COL18A1-207ENST00000473212 ANGEL1Q9UNK9 670 aaKnown RBP24.4■■□□□ 1.5
COL18A1-207ENST00000473212 KRT40Q6A162 431 aa24.4■■□□□ 1.5
COL18A1-207ENST00000473212 VGLL2Q8N8G2 317 aa24.4■■□□□ 1.5
COL18A1-207ENST00000473212 DDX60Q8IY21 1712 aaKnown RBP24.4■■□□□ 1.5
COL18A1-207ENST00000473212 PLEKHG2Q9H7P9 1386 aa24.39■■□□□ 1.5
COL18A1-207ENST00000473212 FANCCQ00597 558 aa24.39■■□□□ 1.5
COL18A1-207ENST00000473212 TRIM28Q13263 835 aaKnown RBP24.39■■□□□ 1.5
COL18A1-207ENST00000473212 APOA5Q6Q788 366 aa24.39■■□□□ 1.5
COL18A1-207ENST00000473212 SHC4Q6S5L8 630 aa24.39■■□□□ 1.5
COL18A1-207ENST00000473212 CARD10Q9BWT7 1032 aa24.39■■□□□ 1.5
COL18A1-207ENST00000473212 HSD3B7Q9H2F3 369 aa24.39■■□□□ 1.5
COL18A1-207ENST00000473212 PSDA5PKW4 1024 aaPredicted RBP24.39■■□□□ 1.49
COL18A1-207ENST00000473212 SH2B2O14492 632 aaPredicted RBP24.39■■□□□ 1.49
COL18A1-207ENST00000473212 RANBP6O60518 1105 aaKnown RBP24.39■■□□□ 1.49
COL18A1-207ENST00000473212 SPECC1Q5M775 1068 aa24.39■■□□□ 1.49
COL18A1-207ENST00000473212 ZNF771Q7L3S4 317 aaPredicted RBP24.39■■□□□ 1.49
COL18A1-207ENST00000473212 PLA2G12BQ9BX93 195 aa24.39■■□□□ 1.49
COL18A1-207ENST00000473212 EVA1CP58658 441 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 PNOCQ13519 176 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 SLC39A14Q15043 492 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 GIGYF2Q6Y7W6 1299 aaKnown RBP24.38■■□□□ 1.49
COL18A1-207ENST00000473212 CTDSPL2Q05D32 466 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 GABPB1Q06547 395 aaPredicted RBP24.38■■□□□ 1.49
COL18A1-207ENST00000473212 GOLGA8FQ08AF8 430 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 GOLGA8DPQ0D2H9 430 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 TRDNQ13061 729 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 CCDC102BQ68D86 513 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 ZMYM6O95789 1325 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 MAP3K15Q6ZN16 1313 aa24.38■■□□□ 1.49
COL18A1-207ENST00000473212 PDE6AP16499 860 aa24.37■■□□□ 1.49
COL18A1-207ENST00000473212 SYKP43405 635 aa24.37■■□□□ 1.49
COL18A1-207ENST00000473212 CTSWP56202 376 aa24.37■■□□□ 1.49
COL18A1-207ENST00000473212 KRT222Q8N1A0 295 aa24.37■■□□□ 1.49
COL18A1-207ENST00000473212 LRRN4CLQ8ND94 238 aa24.37■■□□□ 1.49
COL18A1-207ENST00000473212 DPF2Q92785 391 aa24.37■■□□□ 1.49
COL18A1-207ENST00000473212 L2HGDHQ9H9P8 463 aa24.37■■□□□ 1.49
COL18A1-207ENST00000473212 IRS4O14654 1257 aaPredicted RBP24.37■■□□□ 1.49
COL18A1-207ENST00000473212 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.37■■□□□ 1.491e-11■■■■■ 31.9
COL18A1-207ENST00000473212 FAM217BQ9NTX9 383 aaPredicted RBP24.37■■□□□ 1.49
COL18A1-207ENST00000473212 NRDCO43847 1150 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 HSP90AA4PQ58FG1 418 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 TBC1D2BQ9UPU7 963 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 ZBTB1Q9Y2K1 713 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 IKBKBO14920 756 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 PTPAQ15257 358 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 ERCC6LQ2NKX8 1250 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 EPB41L4AQ9HCS5 686 aaPredicted RBP24.36■■□□□ 1.49
COL18A1-207ENST00000473212 TRMT112Q9UI30 125 aaKnown RBP24.36■■□□□ 1.49
COL18A1-207ENST00000473212 FBXO3Q9UK99 471 aa24.36■■□□□ 1.49
COL18A1-207ENST00000473212 FOXN1O15353 648 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 CMTR1Q8N1G2 835 aaKnown RBP24.35■■□□□ 1.49
COL18A1-207ENST00000473212 ANKRD18BA2A2Z9 1011 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 GUCY1A2P33402 732 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 KCNJ6P48051 423 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 NTRK3Q16288 839 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 CCDC82Q8N4S0 544 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 IGDCC4Q8TDY8 1250 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 ZKSCAN3Q9BRR0 538 aa24.35■■□□□ 1.49
COL18A1-207ENST00000473212 SLFN14P0C7P3 912 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 NFXL1Q6ZNB6 911 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 HOMER1Q86YM7 354 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 TUBE1Q9UJT0 475 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 TCRBV5S4A2TA0A5A2 114 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 PDE8BO95263 885 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 CCDC93Q567U6 631 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 FOXP4Q8IVH2 680 aaPredicted RBP24.34■■□□□ 1.49
COL18A1-207ENST00000473212 TIGD1Q96MW7 591 aa24.34■■□□□ 1.49
COL18A1-207ENST00000473212 MAP3K14Q99558 947 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms