RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	GATAD2B	Q8WXI9	593 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	GAL3ST3	Q96A11	431 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	SPATA32	Q96LK8	384 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	GML	Q99445	158 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	MIR1-1HG	Q9H1L0	117 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	CBX8	Q9HC52	389 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	KCNK4	Q9NYG8	393 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	PCDHB5	Q9Y5E4	795 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	FAM221A	A4D161	298 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	MEGF11	A6BM72	1044 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	CTSB	P07858	339 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	LMNB1	P20700	586 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	TNNI2	P48788	182 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	NLRP12	P59046	1061 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	PAK2	Q13177	524 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	FAM196A	Q6ZSG2	479 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	GOLM1	Q8NBJ4	401 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	SCARF2	Q96GP6	870 aa	Predicted RBP	6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	EAF1	Q96JC9	268 aa	Predicted RBP	6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	LRRC3	Q9BY71	257 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	CAPN10	Q9HC96	672 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	INPP5F	Q9Y2H2	1132 aa		6.15	□□□□□ -1.42
PTCD3-209	ENST00000472044	CNTNAP5	Q8WYK1	1306 aa		6.15	□□□□□ -1.43
PTCD3-209	ENST00000472044	DDX3Y	O15523	660 aa	Known RBP	6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	CILP	O75339	1184 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	ECEL1	O95672	775 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	FAM160A1	Q05DH4	1040 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	PRRT3	Q5FWE3	981 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	EXOSC6	Q5RKV6	272 aa	Known RBP	6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	SNAP47	Q5SQN1	464 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	MAP1S	Q66K74	1059 aa	Predicted RBP	6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	TMEM130	Q8N3G9	435 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	KCNB2	Q92953	911 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	GPRASP2	Q96D09	838 aa		6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	CCDC86	Q9H6F5	360 aa	Known RBP	6.14	□□□□□ -1.43
PTCD3-209	ENST00000472044	ZNF862	O60290	1169 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	DLGAP3	O95886	979 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	F13A1	P00488	732 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	SPATA31C1	P0DKV0	1188 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	PTPN11	Q06124	597 aa	Predicted RBP	6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	COL9A2	Q14055	689 aa	Predicted RBP	6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	MPP2	Q14168	576 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	DUOXA2	Q1HG44	320 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	KIF4B	Q2VIQ3	1234 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	DIEXF	Q68CQ4	756 aa	Known RBP	6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	MPRIP	Q6WCQ1	1025 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	BNC2	Q6ZN30	1099 aa	Predicted RBP	6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	ALYREF	Q86V81	257 aa	Known RBP	6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	SLITRK4	Q8IW52	837 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	GPBAR1	Q8TDU6	330 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	USP26	Q9BXU7	913 aa		6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	MRPL18	Q9H0U6	180 aa	Known RBP	6.13	□□□□□ -1.43
PTCD3-209	ENST00000472044	ATF4	P18848	351 aa	Predicted RBP	6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	RPL6	Q02878	288 aa	Known RBP	6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	SEPT6	Q14141	434 aa		6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	VPS37D	Q86XT2	251 aa		6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	UBASH3B	Q8TF42	649 aa		6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	SEC16B	Q96JE7	1060 aa		6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	TMPRSS13	Q9BYE2	586 aa		6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	ZC3H12C	Q9C0D7	883 aa	Known RBP	6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	SUGCT	Q9HAC7	445 aa		6.12	□□□□□ -1.43
PTCD3-209	ENST00000472044	FAM229A	H3BQW9	127 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	WISP1	O95388	367 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	SELP	P16109	830 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	LIG1	P18858	919 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	COL8A1	P27658	744 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	CRK	P46108	304 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	PDE3A	Q14432	1141 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	SF3A1	Q15459	793 aa	Known RBP	6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	KIAA1211	Q6ZU35	1233 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	SREK1	Q8WXA9	508 aa	Known RBP	6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	JARID2	Q92833	1246 aa	Predicted RBP	6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	LENG1	Q96BZ8	264 aa	Predicted RBP	6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	WDR18	Q9BV38	432 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	RNF208	Q9H0X6	261 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	UBP1	Q9NZI7	540 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	PCDHGC5	Q9Y5F6	944 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	SNCAIP	Q9Y6H5	919 aa		6.11	□□□□□ -1.43
PTCD3-209	ENST00000472044	GFRA2	O00451	464 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	AOC2	O75106	756 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	SLFN14	P0C7P3	912 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	SOX9	P48436	509 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	ARID5A	Q03989	594 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	RING1	Q06587	406 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	APOBR	Q0VD83	1088 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	ZC3H12A	Q5D1E8	599 aa	Known RBP	6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	REC114	Q7Z4M0	266 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	SMG8	Q8ND04	991 aa	Known RBP	6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	NKD1	Q969G9	470 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	WDR89	Q96FK6	387 aa	Predicted RBP	6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	ACSBG1	Q96GR2	724 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	NACC1	Q96RE7	527 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	RUSC1	Q9BVN2	902 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	PCDHA4	Q9UN74	947 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	TACC3	Q9Y6A5	838 aa		6.1	□□□□□ -1.43
PTCD3-209	ENST00000472044	PRR36	Q9H6K5	1346 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	FAM181B	A6NEQ2	426 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	C9orf172	C9J069	976 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044		F8W735	103 aa	Predicted RBP	6.09	□□□□□ -1.43

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