RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ADM5C9JUS6 153 aa23.99■■□□□ 1.43
COL9A3-204ENST00000463487 PLCG2P16885 1265 aa23.99■■□□□ 1.43
COL9A3-204ENST00000463487 NF2P35240 595 aa23.99■■□□□ 1.43
COL9A3-204ENST00000463487 BTDP43251 543 aa23.99■■□□□ 1.43
COL9A3-204ENST00000463487 PDE1AP54750 535 aa23.99■■□□□ 1.43
COL9A3-204ENST00000463487 FKBP1CQ5VVH2 108 aa23.99■■□□□ 1.43
COL9A3-204ENST00000463487 TSHZ3Q63HK5 1081 aa23.99■■□□□ 1.43
COL9A3-204ENST00000463487 DOCK2Q92608 1830 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 GPR75-ASB3A0A0A6YYF3 556 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 HSPA6P17066 643 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 CYP7A1P22680 504 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 APLP1P51693 650 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 SLC9C2Q5TAH2 1124 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 MAGEB6Q8N7X4 407 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 PI4K2BQ8TCG2 481 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 USP40Q9NVE5 1235 aa23.98■■□□□ 1.43
COL9A3-204ENST00000463487 POLR2AP24928 1970 aaKnown RBP23.98■■□□□ 1.43
COL9A3-204ENST00000463487 TRAF5O00463 557 aa23.97■■□□□ 1.43
COL9A3-204ENST00000463487 DEFB129Q9H1M3 183 aa23.97■■□□□ 1.43
COL9A3-204ENST00000463487 ZNF408Q9H9D4 720 aa23.97■■□□□ 1.43
COL9A3-204ENST00000463487 TCP10L2B9ZVM9 353 aa23.96■■□□□ 1.43
COL9A3-204ENST00000463487 CDC42EP5Q6NZY7 148 aa23.96■■□□□ 1.43
COL9A3-204ENST00000463487 ZNF384Q8TF68 577 aa23.96■■□□□ 1.43
COL9A3-204ENST00000463487 EDC3Q96F86 508 aaKnown RBP23.96■■□□□ 1.43
COL9A3-204ENST00000463487 CDCA5Q96FF9 252 aa23.96■■□□□ 1.43
COL9A3-204ENST00000463487 TMEM88BA6NKF7 163 aa23.95■■□□□ 1.42
COL9A3-204ENST00000463487 CELF2O95319 508 aaKnown RBP23.95■■□□□ 1.42
COL9A3-204ENST00000463487 FAM83AQ86UY5 434 aa23.95■■□□□ 1.42
COL9A3-204ENST00000463487 KBTBD3Q8NAB2 608 aa23.95■■□□□ 1.42
COL9A3-204ENST00000463487 TRPM7Q96QT4 1865 aa23.95■■□□□ 1.42
COL9A3-204ENST00000463487 PDE6AP16499 860 aa23.94■■□□□ 1.42
COL9A3-204ENST00000463487 RASA3Q14644 834 aa23.94■■□□□ 1.42
COL9A3-204ENST00000463487 SUPT20HL1Q3ZLR7 823 aa23.94■■□□□ 1.42
COL9A3-204ENST00000463487 HOOK2Q96ED9 719 aa23.94■■□□□ 1.42
COL9A3-204ENST00000463487 OSBPL3Q9H4L5 887 aa23.94■■□□□ 1.42
COL9A3-204ENST00000463487 MYO5AQ9Y4I1 1855 aaKnown RBP23.94■■□□□ 1.42
COL9A3-204ENST00000463487 ZFYP08048 801 aaPredicted RBP23.93■■□□□ 1.42
COL9A3-204ENST00000463487 PLEKHM2Q8IWE5 1019 aa23.93■■□□□ 1.42
COL9A3-204ENST00000463487 CREBZFQ9NS37 354 aa23.93■■□□□ 1.42
COL9A3-204ENST00000463487 AATFQ9NY61 560 aaKnown RBP eCLIP23.93■■□□□ 1.42
COL9A3-204ENST00000463487 ADD2P35612 726 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 CACNB3P54284 484 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 PPP4CP60510 307 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 C2orf69Q8N8R5 385 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 EVI5LQ96CN4 794 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 FSD1Q9BTV5 496 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 IDI2Q9BXS1 227 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 PPP4R2Q9NY27 417 aa23.92■■□□□ 1.42
COL9A3-204ENST00000463487 SCAF8Q9UPN6 1271 aaKnown RBP23.92■■□□□ 1.42
COL9A3-204ENST00000463487 ZNF532Q9HCE3 1301 aa23.91■■□□□ 1.42
COL9A3-204ENST00000463487 FKBP1BP68106 108 aa23.91■■□□□ 1.42
COL9A3-204ENST00000463487 UBE3CQ15386 1083 aa23.91■■□□□ 1.42
COL9A3-204ENST00000463487 TEX11Q8IYF3 940 aa23.91■■□□□ 1.42
COL9A3-204ENST00000463487 FAM151AQ8WW52 585 aa23.91■■□□□ 1.42
COL9A3-204ENST00000463487 ENTPD3O75355 529 aa23.9■■□□□ 1.42
COL9A3-204ENST00000463487 TICAM2Q86XR7 235 aa23.9■■□□□ 1.42
COL9A3-204ENST00000463487 ABT1Q9ULW3 272 aaKnown RBP23.9■■□□□ 1.42
COL9A3-204ENST00000463487 MYH7P12883 1935 aa23.9■■□□□ 1.42
COL9A3-204ENST00000463487 RPAP1Q9BWH6 1393 aaPredicted RBP23.9■■□□□ 1.42
COL9A3-204ENST00000463487 MAGEB6P1A0A0J9YX57 407 aa23.89■■□□□ 1.41
COL9A3-204ENST00000463487 TRIM6-TRIM34B2RNG4 842 aa23.89■■□□□ 1.41
COL9A3-204ENST00000463487 NPM3O75607 178 aaKnown RBP23.89■■□□□ 1.41
COL9A3-204ENST00000463487 RHBDL3P58872 404 aa23.89■■□□□ 1.41
COL9A3-204ENST00000463487 ADGRA1Q86SQ6 560 aa23.89■■□□□ 1.41
COL9A3-204ENST00000463487 MIGA1Q8NAN2 632 aa23.89■■□□□ 1.41
COL9A3-204ENST00000463487 GBA2Q9HCG7 927 aaPredicted RBP23.89■■□□□ 1.41
COL9A3-204ENST00000463487 PPP1R12BO60237 982 aaPredicted RBP23.88■■□□□ 1.41
COL9A3-204ENST00000463487 FMR1Q06787 632 aaKnown RBP eCLIP23.88■■□□□ 1.41
COL9A3-204ENST00000463487 TCP10Q12799 353 aa23.88■■□□□ 1.41
COL9A3-204ENST00000463487 PICALMQ13492 652 aa23.88■■□□□ 1.41
COL9A3-204ENST00000463487 TTLL12Q14166 644 aaPredicted RBP23.88■■□□□ 1.41
COL9A3-204ENST00000463487 CST9Q5W186 159 aa23.88■■□□□ 1.41
COL9A3-204ENST00000463487 SH3RF3Q8TEJ3 882 aaPredicted RBP23.88■■□□□ 1.41
COL9A3-204ENST00000463487 TMEM39BQ9GZU3 492 aa23.88■■□□□ 1.41
COL9A3-204ENST00000463487 TCRBV5S4A2TA0A5A2 114 aa23.87■■□□□ 1.41
COL9A3-204ENST00000463487 RNF113AO15541 343 aaKnown RBP23.87■■□□□ 1.41
COL9A3-204ENST00000463487 WDHD1O75717 1129 aaPredicted RBP23.87■■□□□ 1.41
COL9A3-204ENST00000463487 RGS3P49796 1198 aa23.87■■□□□ 1.41
COL9A3-204ENST00000463487 NFIAQ12857 509 aa23.87■■□□□ 1.41
COL9A3-204ENST00000463487 PRAMEF18Q5VWM3 479 aa23.87■■□□□ 1.41
COL9A3-204ENST00000463487 ARMC9Q7Z3E5 817 aa23.87■■□□□ 1.41
COL9A3-204ENST00000463487 ZSCAN29Q8IWY8 852 aaPredicted RBP23.87■■□□□ 1.41
COL9A3-204ENST00000463487 CRNKL1Q9BZJ0 848 aaKnown RBP23.87■■□□□ 1.41
COL9A3-204ENST00000463487 CNTNAP1P78357 1384 aa23.87■■□□□ 1.41
COL9A3-204ENST00000463487 DLK2Q6UY11 383 aa23.86■■□□□ 1.41
COL9A3-204ENST00000463487 APPBP2Q92624 585 aa23.86■■□□□ 1.41
COL9A3-204ENST00000463487 RILPL2Q969X0 211 aa23.86■■□□□ 1.41
COL9A3-204ENST00000463487 AIDAQ96BJ3 306 aa23.86■■□□□ 1.41
COL9A3-204ENST00000463487 FAM198AQ9UFP1 575 aa23.86■■□□□ 1.41
COL9A3-204ENST00000463487 RFX7Q2KHR2 1363 aa23.86■■□□□ 1.41
COL9A3-204ENST00000463487 PAPPA2Q9BXP8 1791 aa23.86■■□□□ 1.41
COL9A3-204ENST00000463487 PDE4AP27815 886 aa23.85■■□□□ 1.41
COL9A3-204ENST00000463487 USP5P45974 858 aa23.85■■□□□ 1.41
COL9A3-204ENST00000463487 DCAF15Q66K64 600 aa23.85■■□□□ 1.41
COL9A3-204ENST00000463487 DYNLL1P63167 89 aaKnown RBP23.84■■□□□ 1.41
COL9A3-204ENST00000463487 NBPF12Q5TAG4 269 aaPredicted RBP23.84■■□□□ 1.41
COL9A3-204ENST00000463487 TGFBRAP1Q8WUH2 860 aa23.84■■□□□ 1.41
COL9A3-204ENST00000463487 DDRGK1Q96HY6 314 aa23.84■■□□□ 1.41
COL9A3-204ENST00000463487 TLL2Q9Y6L7 1015 aa23.84■■□□□ 1.41
COL9A3-204ENST00000463487 COL2A1P02458 1487 aaPredicted RBP23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms