RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 PRDX5P30044 214 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 HIRAP54198 1017 aaPredicted RBP9.34□□□□□ -0.91
USP4-207ENST00000462673 PDE1AP54750 535 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 C1QTNF8P60827 252 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 NBPF9Q3BBW0 867 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 ANGEL2Q5VTE6 544 aaKnown RBP9.34□□□□□ -0.91
USP4-207ENST00000462673 TBC1D9Q6ZT07 1266 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 FAM83AQ86UY5 434 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 NSUN4Q96CB9 384 aaKnown RBP9.34□□□□□ -0.91
USP4-207ENST00000462673 OSBPL3Q9H4L5 887 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 USP40Q9NVE5 1235 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 TLR7Q9NYK1 1049 aaKnown RBP9.34□□□□□ -0.91
USP4-207ENST00000462673 ISY1Q9ULR0 285 aaKnown RBP9.34□□□□□ -0.91
USP4-207ENST00000462673 TRIM6-TRIM34B2RNG4 842 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 PPP1R12BO60237 982 aaPredicted RBP9.33□□□□□ -0.92
USP4-207ENST00000462673 CYP7A1P22680 504 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 PPP4CP60510 307 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 FKBP1BP68106 108 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 MAP1SQ66K74 1059 aaPredicted RBP9.33□□□□□ -0.92
USP4-207ENST00000462673 USP48Q86UV5 1035 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 AMOTL1Q8IY63 956 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 C2orf69Q8N8R5 385 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 TDRD3Q9H7E2 651 aaKnown RBP9.33□□□□□ -0.92
USP4-207ENST00000462673 VEZTQ9HBM0 779 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 GGA3Q9NZ52 723 aa9.33□□□□□ -0.92
USP4-207ENST00000462673 ZNF70Q9UC06 446 aaPredicted RBP9.33□□□□□ -0.92
USP4-207ENST00000462673 MROH7-TTC4A0A0A0MT08 1334 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 A0A1B0GUL6 1792 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 GOLGA6L3A6NEY3 463 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 UNCXA6NJT0 531 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 NPM3O75607 178 aaKnown RBP9.32□□□□□ -0.92
USP4-207ENST00000462673 BTDP43251 543 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 APLP1P51693 650 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 MFAP1P55081 439 aaKnown RBP9.32□□□□□ -0.92
USP4-207ENST00000462673 UBE3CQ15386 1083 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 SPDYE2Q495Y8 402 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 APOBEC3HQ6NTF7 200 aaKnown RBP9.32□□□□□ -0.92
USP4-207ENST00000462673 MAGEB6Q8N7X4 407 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 KBTBD3Q8NAB2 608 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 TRPM4Q8TD43 1214 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 ZBED3Q96IU2 234 aaPredicted RBP9.32□□□□□ -0.92
USP4-207ENST00000462673 TBC1D32Q96NH3 1257 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 DEFB129Q9H1M3 183 aa9.32□□□□□ -0.92
USP4-207ENST00000462673 DHX36Q9H2U1 1008 aaKnown RBP9.32□□□□□ -0.92
USP4-207ENST00000462673 GAKO14976 1311 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 ARAP2Q8WZ64 1704 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 PSME4Q14997 1843 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 MAGEB6P1A0A0J9YX57 407 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 TMEM88BA6NKF7 163 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 DDX11L8A8MPP1 907 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 ENTPD3O75355 529 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 ITGBL1O95965 494 aaPredicted RBP9.31□□□□□ -0.92
USP4-207ENST00000462673 GNAT2P19087 354 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 DIXDC1Q155Q3 683 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 DCAF15Q66K64 600 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 PI16Q6UXB8 463 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 ARMC9Q7Z3E5 817 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 PLEKHM2Q8IWE5 1019 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 ZSCAN29Q8IWY8 852 aaPredicted RBP9.31□□□□□ -0.92
USP4-207ENST00000462673 FAM151AQ8WW52 585 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 RILPL2Q969X0 211 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 AIDAQ96BJ3 306 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 FSD1Q9BTV5 496 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 IDI2Q9BXS1 227 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 CRNKL1Q9BZJ0 848 aaKnown RBP9.31□□□□□ -0.92
USP4-207ENST00000462673 SLKQ9H2G2 1235 aaPredicted RBP9.31□□□□□ -0.92
USP4-207ENST00000462673 TAOK2Q9UL54 1235 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 DAGLAQ9Y4D2 1042 aa9.31□□□□□ -0.92
USP4-207ENST00000462673 SCN9AQ15858 1988 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 COL1A1P02452 1464 aaPredicted RBP9.3□□□□□ -0.92
USP4-207ENST00000462673 SHTN1A0MZ66 631 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 CLRN2A0PK11 232 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 TCP10L2B9ZVM9 353 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 RNF113AO15541 343 aaKnown RBP9.3□□□□□ -0.92
USP4-207ENST00000462673 EGFRP00533 1210 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 PTMSP20962 102 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 USP5P45974 858 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 TTLL12Q14166 644 aaPredicted RBP9.3□□□□□ -0.92
USP4-207ENST00000462673 RASA3Q14644 834 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 CDC42EP5Q6NZY7 148 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 CASC1Q6TDU7 716 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 TEX11Q8IYF3 940 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 PI4K2BQ8TCG2 481 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 TRIM34Q9BYJ4 488 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 ANTXR1Q9H6X2 564 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 PIH1D3Q9NQM4 214 aaKnown RBP9.3□□□□□ -0.92
USP4-207ENST00000462673 CREBZFQ9NS37 354 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 AATFQ9NY61 560 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP4-207ENST00000462673 ZNF532Q9HCE3 1301 aa9.3□□□□□ -0.92
USP4-207ENST00000462673 MYH13Q9UKX3 1938 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 CELF2O95319 508 aaKnown RBP9.29□□□□□ -0.92
USP4-207ENST00000462673 HLA-DOAP06340 250 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 POTEIP0CG38 1075 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 POTEJP0CG39 1038 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 PDE6AP16499 860 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 HSPA6P17066 643 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 ADD2P35612 726 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 IREB2P48200 963 aaKnown RBP9.29□□□□□ -0.92
USP4-207ENST00000462673 GRIK5Q16478 980 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 TTC6Q86TZ1 520 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms