RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 ORC3Q9UBD5 711 aaPredicted RBP16.3■□□□□ 0.2
PTPRN-210ENST00000460801 RCOR1Q9UKL0 485 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 HSPA1LP34931 641 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 UVSSAQ2YD98 709 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 APOA5Q6Q788 366 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 ILDR1Q86SU0 546 aaPredicted RBP16.3■□□□□ 0.2
PTPRN-210ENST00000460801 VPS37DQ86XT2 251 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 RGS22Q8NE09 1264 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 KRT23Q9C075 422 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 BCL11BQ9C0K0 894 aaPredicted RBP16.3■□□□□ 0.2
PTPRN-210ENST00000460801 LY9Q9HBG7 655 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 RAI14Q9P0K7 980 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 TRPC5Q9UL62 973 aaPredicted RBP16.3■□□□□ 0.2
PTPRN-210ENST00000460801 PDS5AQ29RF7 1337 aaKnown RBP16.29■□□□□ 0.2
PTPRN-210ENST00000460801 LIFRP42702 1097 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 TDO2P48775 406 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 GUCY1B3Q02153 619 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 FAM196AQ6ZSG2 479 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 MFSD6Q6ZSS7 791 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 RAB11FIP4Q86YS3 637 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 CCDC24Q8N4L8 307 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 FBXO18Q8NFZ0 1043 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 SENP2Q9HC62 589 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 ESPNB1AK53 854 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 KDM4AO75164 1064 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 METAP2P50579 478 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTPRN-210ENST00000460801 C8orf76Q96K31 380 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 ZNF396Q96N95 335 aaPredicted RBP16.29■□□□□ 0.2
PTPRN-210ENST00000460801 LRRC4BQ9NT99 713 aa16.29■□□□□ 0.2
PTPRN-210ENST00000460801 MAGEB6P1A0A0J9YX57 407 aa16.28■□□□□ 0.2
PTPRN-210ENST00000460801 KLRK1P26718 216 aa16.28■□□□□ 0.2
PTPRN-210ENST00000460801 TMEM67Q5HYA8 995 aa16.28■□□□□ 0.2
PTPRN-210ENST00000460801 RIOK1Q9BRS2 568 aaKnown RBP16.28■□□□□ 0.2
PTPRN-210ENST00000460801 NUP62CLQ9H1M0 184 aa16.28■□□□□ 0.2
PTPRN-210ENST00000460801 DDX19AQ9NUU7 478 aaKnown RBP16.28■□□□□ 0.2
PTPRN-210ENST00000460801 DACT1Q9NYF0 836 aa16.28■□□□□ 0.2
PTPRN-210ENST00000460801 ZBTB22O15209 634 aa16.27■□□□□ 0.2
PTPRN-210ENST00000460801 USP28Q96RU2 1077 aa16.27■□□□□ 0.2
PTPRN-210ENST00000460801 TNRC6CQ9HCJ0 1690 aaKnown RBP16.27■□□□□ 0.2
PTPRN-210ENST00000460801 ADRA2BP18089 450 aa16.27■□□□□ 0.19
PTPRN-210ENST00000460801 NFIXQ14938 502 aa16.27■□□□□ 0.19
PTPRN-210ENST00000460801 HS1BP3Q53T59 392 aa16.27■□□□□ 0.19
PTPRN-210ENST00000460801 OTUD7BQ6GQQ9 843 aa16.27■□□□□ 0.19
PTPRN-210ENST00000460801 ZNF384Q8TF68 577 aa16.27■□□□□ 0.19
PTPRN-210ENST00000460801 MTA3Q9BTC8 594 aa16.27■□□□□ 0.19
PTPRN-210ENST00000460801 ANAPC4Q9UJX5 808 aa16.27■□□□□ 0.19
PTPRN-210ENST00000460801 IFIT3O14879 490 aaKnown RBP16.26■□□□□ 0.19
PTPRN-210ENST00000460801 ZBTB43O43298 467 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 CDKL5O76039 1030 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 CDC27P30260 824 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 HIBADHP31937 336 aaKnown RBP16.26■□□□□ 0.19
PTPRN-210ENST00000460801 MAP3K11Q16584 847 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 FTOQ9C0B1 505 aaKnown RBP eCLIP16.26■□□□□ 0.19
PTPRN-210ENST00000460801 MYH13Q9UKX3 1938 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 CEBPZQ03701 1054 aaKnown RBP16.26■□□□□ 0.19
PTPRN-210ENST00000460801 PPARAQ07869 468 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 NFXL1Q6ZNB6 911 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 RBM43Q6ZSC3 357 aaKnown RBP16.26■□□□□ 0.19
PTPRN-210ENST00000460801 BICD2Q8TD16 824 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 SDR42E1Q8WUS8 393 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 CLSTN2Q9H4D0 955 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 RNF41Q9H4P4 317 aaPredicted RBP16.26■□□□□ 0.19
PTPRN-210ENST00000460801 FAM217BQ9NTX9 383 aaPredicted RBP16.26■□□□□ 0.19
PTPRN-210ENST00000460801 IRS2Q9Y4H2 1338 aa16.26■□□□□ 0.19
PTPRN-210ENST00000460801 NR1I2O75469 434 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 CLCN1P35523 988 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 NTRK3Q16288 839 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 NID2Q14112 1375 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 CCDC192P0DO97 292 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 RXRAP19793 462 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 CPLX2Q6PUV4 134 aaKnown RBP16.25■□□□□ 0.19
PTPRN-210ENST00000460801 BRAPQ7Z569 592 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 MICU3Q86XE3 530 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 NSUN4Q96CB9 384 aaKnown RBP16.25■□□□□ 0.19
PTPRN-210ENST00000460801 TNMDQ9H2S6 317 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 RTEL1Q9NZ71 1219 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 TFCP2L1Q9NZI6 479 aa16.25■□□□□ 0.19
PTPRN-210ENST00000460801 UBR3Q6ZT12 1888 aa16.24■□□□□ 0.19
PTPRN-210ENST00000460801 NPHP1O15259 732 aa16.24■□□□□ 0.19
PTPRN-210ENST00000460801 CAMK4Q16566 473 aa16.24■□□□□ 0.19
PTPRN-210ENST00000460801 BRIP1Q9BX63 1249 aa16.24■□□□□ 0.19
PTPRN-210ENST00000460801 SLC12A7Q9Y666 1083 aa16.24■□□□□ 0.19
PTPRN-210ENST00000460801 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 CCDC69A6NI79 296 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 GOLGA8AA7E2F4 631 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 DYNLL1P63167 89 aaKnown RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 GRAPQ13588 217 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 SART3Q15020 963 aaKnown RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 CNBD1Q8NA66 436 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 GRAPLQ8TC17 118 aaPredicted RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 GJB4Q9NTQ9 266 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 KIF23Q02241 960 aaPredicted RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 MECOMQ03112 1051 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 RRP12Q5JTH9 1297 aaKnown RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 TMED8Q6PL24 325 aaPredicted RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 TXNRD3Q86VQ6 643 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 ALG1Q9BT22 464 aa16.23■□□□□ 0.19
PTPRN-210ENST00000460801 QTRT2Q9H974 415 aaKnown RBP16.23■□□□□ 0.19
PTPRN-210ENST00000460801 RANBP6O60518 1105 aaKnown RBP16.22■□□□□ 0.19
PTPRN-210ENST00000460801 ZSCAN30Q86W11 494 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms