RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-208ENST00000449234 DTNBO60941 627 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 SLC5A1P13866 664 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 MAP3K12Q12852 859 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 SCARF1Q14162 830 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 PARP10Q53GL7 1025 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 LRRC8AQ8IWT6 810 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 STRBPQ96SI9 672 aaKnown RBP13.32□□□□□ -0.28
RFX3-208ENST00000449234 STRN4Q9NRL3 753 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 TRMT112Q9UI30 125 aaKnown RBP13.32□□□□□ -0.28
RFX3-208ENST00000449234 MYH7P12883 1935 aa13.32□□□□□ -0.28
RFX3-208ENST00000449234 DDX60Q8IY21 1712 aaKnown RBP13.32□□□□□ -0.28
RFX3-208ENST00000449234 TOGARAM1Q9Y4F4 1720 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 ANKRD36CQ5JPF3 1778 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 TCRBV5S4A2TA0A5A2 114 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 NRDCO43847 1150 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 CUTAO60888 179 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 SLC3A2P08195 630 aaKnown RBP13.31□□□□□ -0.28
RFX3-208ENST00000449234 PDE6AP16499 860 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 U2AF2P26368 475 aaKnown RBP eCLIP13.31□□□□□ -0.28
RFX3-208ENST00000449234 METAP2P50579 478 aaKnown RBP eCLIP13.31□□□□□ -0.28
RFX3-208ENST00000449234 CEBPZQ03701 1054 aaKnown RBP13.31□□□□□ -0.28
RFX3-208ENST00000449234 SLFNL1Q499Z3 407 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 AXDND1Q5T1B0 1012 aaPredicted RBP13.31□□□□□ -0.28
RFX3-208ENST00000449234 CCDC102BQ68D86 513 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 DHX40Q8IX18 779 aaKnown RBP13.31□□□□□ -0.28
RFX3-208ENST00000449234 IGDCC4Q8TDY8 1250 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 GREM2Q9H772 168 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 TUBE1Q9UJT0 475 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 NHSL1Q5SYE7 1610 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 AKAP11Q9UKA4 1901 aa13.31□□□□□ -0.28
RFX3-208ENST00000449234 A0A0G2JLW4 131 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 IGSF3O75054 1194 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 ZNF202O95125 648 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 RBM10P98175 930 aaKnown RBP13.3□□□□□ -0.28
RFX3-208ENST00000449234 TRIM29Q14134 588 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 HLFQ16534 295 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 C11orf57Q6ZUT1 292 aaPredicted RBP13.3□□□□□ -0.28
RFX3-208ENST00000449234 PDCL2Q8N4E4 241 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 CACTINQ8WUQ7 758 aaKnown RBP13.3□□□□□ -0.28
RFX3-208ENST00000449234 ALG1Q9BT22 464 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 HOOK1Q9UJC3 728 aaKnown RBP13.3□□□□□ -0.28
RFX3-208ENST00000449234 CLIC4Q9Y696 253 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 PNPLA7Q6ZV29 1317 aa13.3□□□□□ -0.28
RFX3-208ENST00000449234 CCDC196A0A1B0GTZ2 297 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 ZBTB43O43298 467 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 CCP110O43303 1012 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 CBFA2T2O43439 604 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 IFNAR1P17181 557 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 IARSP41252 1262 aaKnown RBP13.29□□□□□ -0.28
RFX3-208ENST00000449234 VASPP50552 380 aaPredicted RBP13.29□□□□□ -0.28
RFX3-208ENST00000449234 NDUFA8P51970 172 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 HAND2P61296 217 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 CT47A1Q5JQC4 288 aaPredicted RBP13.29□□□□□ -0.28
RFX3-208ENST00000449234 APOA5Q6Q788 366 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 CHST3Q7LGC8 479 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 DZIP3Q86Y13 1208 aaKnown RBP13.29□□□□□ -0.28
RFX3-208ENST00000449234 CCDC150Q8NCX0 1101 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 AIDAQ96BJ3 306 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 CCDC94Q9BW85 323 aaPredicted RBP13.29□□□□□ -0.28
RFX3-208ENST00000449234 NACAP1Q9BZK3 213 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 RNF41Q9H4P4 317 aaPredicted RBP13.29□□□□□ -0.28
RFX3-208ENST00000449234 PIH1D3Q9NQM4 214 aaKnown RBP13.29□□□□□ -0.28
RFX3-208ENST00000449234 HPSEQ9Y251 543 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 ZNF532Q9HCE3 1301 aa13.29□□□□□ -0.28
RFX3-208ENST00000449234 COL14A1Q05707 1796 aaKnown RBP13.28□□□□□ -0.28
RFX3-208ENST00000449234 A0A1B0GVL5 298 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 RIOK3O14730 519 aaKnown RBP13.28□□□□□ -0.28
RFX3-208ENST00000449234 TNNT1P13805 278 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 NT5C2P49902 561 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 EIF5P55010 431 aaKnown RBP13.28□□□□□ -0.28
RFX3-208ENST00000449234 GUCY1B3Q02153 619 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 SSRP1Q08945 709 aaKnown RBP13.28□□□□□ -0.28
RFX3-208ENST00000449234 SART3Q15020 963 aaKnown RBP13.28□□□□□ -0.28
RFX3-208ENST00000449234 NTRK3Q16288 839 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 KRT40Q6A162 431 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 IFNL3Q8IZI9 196 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 MPNDQ8N594 471 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 SPATA5Q8NB90 893 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 ANKRD7Q92527 254 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 NRBP1Q9UHY1 535 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 THRAP3Q9Y2W1 955 aaKnown RBP13.28□□□□□ -0.28
RFX3-208ENST00000449234 MYH3P11055 1940 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 LRP5O75197 1615 aa13.28□□□□□ -0.28
RFX3-208ENST00000449234 ARAP2Q8WZ64 1704 aa13.27□□□□□ -0.28
RFX3-208ENST00000449234 ITGB4P16144 1822 aa13.27□□□□□ -0.28
RFX3-208ENST00000449234 PSDA5PKW4 1024 aaPredicted RBP13.27□□□□□ -0.29
RFX3-208ENST00000449234 FMNL1O95466 1100 aaPredicted RBP13.27□□□□□ -0.29
RFX3-208ENST00000449234 APPP05067 770 aa13.27□□□□□ -0.29
RFX3-208ENST00000449234 POLR3DP05423 398 aaPredicted RBP13.27□□□□□ -0.29
RFX3-208ENST00000449234 PCP11498 1178 aaKnown RBP13.27□□□□□ -0.29
RFX3-208ENST00000449234 PTPAQ15257 358 aa13.27□□□□□ -0.29
RFX3-208ENST00000449234 SAFBQ15424 915 aaKnown RBP eCLIP13.27□□□□□ -0.29
RFX3-208ENST00000449234 TPD52L1Q16890 204 aaPredicted RBP13.27□□□□□ -0.29
RFX3-208ENST00000449234 AKNAD1Q5T1N1 836 aa13.27□□□□□ -0.29
RFX3-208ENST00000449234 KANK3Q6NY19 840 aa13.27□□□□□ -0.29
RFX3-208ENST00000449234 CYB5R4Q7L1T6 521 aa13.27□□□□□ -0.29
RFX3-208ENST00000449234 STAG1Q8WVM7 1258 aa13.27□□□□□ -0.29
RFX3-208ENST00000449234 CDC5LQ99459 802 aaKnown RBP13.27□□□□□ -0.29
RFX3-208ENST00000449234 UTP14AQ9BVJ6 771 aaKnown RBP13.27□□□□□ -0.29
RFX3-208ENST00000449234 NBPF3Q9H094 633 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms