RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 UBAC1Q9BSL1 405 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 ZC3H12CQ9C0D7 883 aaKnown RBP7.07□□□□□ -1.28
VPS50-205ENST00000441602 COA1Q9GZY4 146 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 ANGEL1Q9UNK9 670 aaKnown RBP7.07□□□□□ -1.28
VPS50-205ENST00000441602 LARGE1O95461 756 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 APOBRQ0VD83 1088 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 GRIPAP1Q4V328 841 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 TMEM67Q5HYA8 995 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 C2CD5Q86YS7 1000 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 STAG1Q8WVM7 1258 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 ZNF287Q9HBT7 754 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 ARPP21Q9UBL0 812 aaPredicted RBP7.07□□□□□ -1.28
VPS50-205ENST00000441602 CCDC196A0A1B0GTZ2 297 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 GSG1L2A8MUP6 293 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 IFIT3O14879 490 aaKnown RBP7.07□□□□□ -1.28
VPS50-205ENST00000441602 USP5P45974 858 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 KLHL40Q2TBA0 621 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 DPP8Q6V1X1 898 aaPredicted RBP7.07□□□□□ -1.28
VPS50-205ENST00000441602 SUPT20HQ8NEM7 779 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 ZNF622Q969S3 477 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS50-205ENST00000441602 LRRC2Q9BYS8 371 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 ZSCAN16Q9H4T2 348 aaPredicted RBP7.07□□□□□ -1.28
VPS50-205ENST00000441602 SUGT1Q9Y2Z0 365 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 TNRC6CQ9HCJ0 1690 aaKnown RBP7.06□□□□□ -1.28
VPS50-205ENST00000441602 MINDY4BA8MYZ0 360 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 KRT85P78386 507 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 MECOMQ03112 1051 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 PPARAQ07869 468 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 RRP12Q5JTH9 1297 aaKnown RBP7.06□□□□□ -1.28
VPS50-205ENST00000441602 POTEAQ6S8J7 498 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 WASF1Q92558 559 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 NSUN4Q96CB9 384 aaKnown RBP7.06□□□□□ -1.28
VPS50-205ENST00000441602 CD209Q9NNX6 404 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 ANAPC4Q9UJX5 808 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 TAF6LQ9Y6J9 622 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 DOCK2Q92608 1830 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 EVCP57679 992 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 PDE4BQ07343 736 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 IQCA1Q86XH1 822 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 RGS22Q8NE09 1264 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 SLC16A10Q8TF71 515 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 PTPDC1A2A3K4 754 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 GOLGA6L4A6NEF3 574 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 GOLGA8AA7E2F4 631 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 B4E1Z4 1266 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 SH2B2O14492 632 aaPredicted RBP7.06□□□□□ -1.28
VPS50-205ENST00000441602 ZBTB43O43298 467 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 PRPF40AO75400 957 aaKnown RBP7.06□□□□□ -1.28
VPS50-205ENST00000441602 SRGNP10124 158 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 PDIA3P30101 505 aaKnown RBP7.06□□□□□ -1.28
VPS50-205ENST00000441602 LIFRP42702 1097 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 RCAN1P53805 252 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 TRIM29Q14134 588 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 WTAPQ15007 396 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 PPP2R5BQ15173 497 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 TBC1D10CQ8IV04 446 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 TBC1D16Q8TBP0 767 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 ZNF396Q96N95 335 aaPredicted RBP7.06□□□□□ -1.28
VPS50-205ENST00000441602 MTMR6Q9Y217 621 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 SLC12A7Q9Y666 1083 aa7.06□□□□□ -1.28
VPS50-205ENST00000441602 GOLGA6L3A6NEY3 463 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 IL1R1P14778 569 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 METAP2P50579 478 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS50-205ENST00000441602 ATL3Q6DD88 541 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 CCDC125Q86Z20 511 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 SMARCC2Q8TAQ2 1214 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 EPB41L4AQ9HCS5 686 aaPredicted RBP7.05□□□□□ -1.28
VPS50-205ENST00000441602 ZDHHC9Q9Y397 364 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 KDM4AO75164 1064 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 CALM1P0DP23 149 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 CALM2P0DP24 149 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 CALM3P0DP25 149 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 KLRK1P26718 216 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 CCT2P78371 535 aaKnown RBP7.05□□□□□ -1.28
VPS50-205ENST00000441602 EN1Q05925 392 aaPredicted RBP7.05□□□□□ -1.28
VPS50-205ENST00000441602 MSL1Q68DK7 614 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 TRIM22Q8IYM9 498 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 FBXW7Q969H0 707 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 CAMKK2Q96RR4 588 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 RIOK1Q9BRS2 568 aaKnown RBP7.05□□□□□ -1.28
VPS50-205ENST00000441602 SCAND2PQ9GZW5 306 aaPredicted RBP7.05□□□□□ -1.28
VPS50-205ENST00000441602 A0A1B0GUL6 1792 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 FAM205AQ6ZU69 1335 aa7.05□□□□□ -1.28
VPS50-205ENST00000441602 MAST2Q6P0Q8 1798 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 FOXP2O15409 715 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 PRKAB2O43741 272 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 PPP4CP60510 307 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 AKAP17AQ02040 695 aaKnown RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 CTDSPL2Q05D32 466 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 SCRN1Q12765 414 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 EZH2Q15910 746 aaKnown RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 SBK1Q52WX2 424 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 NSUN7Q8NE18 718 aaKnown RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 CFAP45Q9UL16 551 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 MROH7-TTC4A0A0A0MT08 1334 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 DYNLL1P63167 89 aaKnown RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 PKP1Q13835 747 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 CHST3Q7LGC8 479 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 TMEM87AQ8NBN3 555 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 DDX11Q96FC9 970 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms