RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 DNAJC10Q8IXB1 793 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 XPO4Q9C0E2 1151 aaKnown RBP13.06□□□□□ -0.32
USP4-205ENST00000431357 OGFRQ9NZT2 677 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 IFNKQ9P0W0 207 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 HPSEQ9Y251 543 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 ZNF330Q9Y3S2 320 aaPredicted RBP13.06□□□□□ -0.32
USP4-205ENST00000431357 CCP110O43303 1012 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 CBFA2T2O43439 604 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 SFPQP23246 707 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP4-205ENST00000431357 ARID4AP29374 1257 aaPredicted RBP13.06□□□□□ -0.32
USP4-205ENST00000431357 CTSWP56202 376 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 GNL2Q13823 731 aaKnown RBP13.06□□□□□ -0.32
USP4-205ENST00000431357 NCAPHQ15003 741 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 SGMS1Q86VZ5 419 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 VPS37DQ86XT2 251 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 ELOA2Q8IYF1 753 aaPredicted RBP13.06□□□□□ -0.32
USP4-205ENST00000431357 FBXW7Q969H0 707 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 ERO1AQ96HE7 468 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 CCDC85AQ96PX6 553 aaPredicted RBP13.06□□□□□ -0.32
USP4-205ENST00000431357 NBPF3Q9H094 633 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 SOS2Q07890 1332 aaPredicted RBP13.05□□□□□ -0.32
USP4-205ENST00000431357 STK36Q9NRP7 1315 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 ZBTB43O43298 467 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 WDHD1O75717 1129 aaPredicted RBP13.05□□□□□ -0.32
USP4-205ENST00000431357 PDE8BO95263 885 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 APPP05067 770 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 U2AF2P26368 475 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP4-205ENST00000431357 APOA5Q6Q788 366 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 PI16Q6UXB8 463 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 CYB5R4Q7L1T6 521 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 TMC6Q7Z403 805 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 TBC1D10CQ8IV04 446 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 VGLL2Q8N8G2 317 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 GREM2Q9H772 168 aa13.05□□□□□ -0.32
USP4-205ENST00000431357 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.05□□□□□ -0.32
USP4-205ENST00000431357 CUTAO60888 179 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 ZSCAN20P17040 1043 aaPredicted RBP13.04□□□□□ -0.32
USP4-205ENST00000431357 IARSP41252 1262 aaKnown RBP13.04□□□□□ -0.32
USP4-205ENST00000431357 LIFRP42702 1097 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 EVA1CP58658 441 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 PTPAQ15257 358 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 RAB11FIP4Q86YS3 637 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 WASF1Q92558 559 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 PIH1D3Q9NQM4 214 aaKnown RBP13.04□□□□□ -0.32
USP4-205ENST00000431357 AKAP11Q9UKA4 1901 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 ZNF532Q9HCE3 1301 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 IDH1O75874 414 aaKnown RBP13.04□□□□□ -0.32
USP4-205ENST00000431357 PDE6AP16499 860 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 FANCCQ00597 558 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 RESP18Q5W5W9 173 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 IGDCC4Q8TDY8 1250 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 GJB4Q9NTQ9 266 aa13.04□□□□□ -0.32
USP4-205ENST00000431357 TRMT1Q9NXH9 659 aaKnown RBP13.04□□□□□ -0.32
USP4-205ENST00000431357 GOLGA8AA7E2F4 631 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 PATL2C9JE40 543 aaKnown RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 BIN1O00499 593 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 IRS4O14654 1257 aaPredicted RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 PDE8AO60658 829 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 SLU7O95391 586 aaKnown RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 MARCKSP29966 332 aaPredicted RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 CCDC102BQ68D86 513 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 OLFM4Q6UX06 510 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 NFXL1Q6ZNB6 911 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 PAXIP1Q6ZW49 1069 aaPredicted RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 ZNF397Q8NF99 534 aaPredicted RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 LPIN2Q92539 896 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 AIDAQ96BJ3 306 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 STRBPQ96SI9 672 aaKnown RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 MAP3K14Q99558 947 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 CNNM2Q9H8M5 875 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 HOOK1Q9UJC3 728 aaKnown RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 MROH7-TTC4A0A0A0MT08 1334 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 MROH5Q6ZUA9 1318 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 TOGARAM1Q9Y4F4 1720 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 TCRBV5S4A2TA0A5A2 114 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 MYL5Q02045 173 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 PUM3Q15397 648 aaKnown RBP13.03□□□□□ -0.32
USP4-205ENST00000431357 NTRK3Q16288 839 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 ARMCX5Q6P1M9 558 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 SHC4Q6S5L8 630 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 TEX2Q8IWB9 1127 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 PIGBQ92521 554 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 AK7Q96M32 723 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP4-205ENST00000431357 TMEM51Q9NW97 253 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 ASAP1Q9ULH1 1129 aa13.03□□□□□ -0.32
USP4-205ENST00000431357 NID2Q14112 1375 aa13.02□□□□□ -0.32
USP4-205ENST00000431357 B4E1Z4 1266 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 CDC27P30260 824 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 SSRP1Q08945 709 aaKnown RBP13.02□□□□□ -0.33
USP4-205ENST00000431357 HLFQ16534 295 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 TMEM67Q5HYA8 995 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 E4F1Q66K89 784 aaPredicted RBP13.02□□□□□ -0.33
USP4-205ENST00000431357 PPP1R13BQ96KQ4 1090 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 NOL10Q9BSC4 688 aaKnown RBP13.02□□□□□ -0.33
USP4-205ENST00000431357 MTA3Q9BTC8 594 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 KRT23Q9C075 422 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 LY9Q9HBG7 655 aa13.02□□□□□ -0.33
USP4-205ENST00000431357 ERVV-1B6SEH8 477 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 FMNL1O95466 1100 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms