RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 RPS26P62854 115 aaKnown RBP9.64□□□□□ -0.87
CCDC88A-206ENST00000430086 PDE3AQ14432 1141 aa9.64□□□□□ -0.87
CCDC88A-206ENST00000430086 TTBK2Q6IQ55 1244 aa9.64□□□□□ -0.87
CCDC88A-206ENST00000430086 KCNB2Q92953 911 aa9.64□□□□□ -0.87
CCDC88A-206ENST00000430086 MRRFQ96E11 262 aaKnown RBP9.64□□□□□ -0.87
CCDC88A-206ENST00000430086 BACH2Q9BYV9 841 aa9.64□□□□□ -0.87
CCDC88A-206ENST00000430086 ZC3H12CQ9C0D7 883 aaKnown RBP9.64□□□□□ -0.87
CCDC88A-206ENST00000430086 ZNF862O60290 1169 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 AOC2O75106 756 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 TRIM37O94972 964 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 KIF4BQ2VIQ3 1234 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 RASIP1Q5U651 963 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 LLGL2Q6P1M3 1020 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 GRIN3AQ8TCU5 1115 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 WDR18Q9BV38 432 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 CBX8Q9HC52 389 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 TPSG1Q9NRR2 321 aa9.63□□□□□ -0.87
CCDC88A-206ENST00000430086 LIG3P49916 1009 aa9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 MAP1SQ66K74 1059 aaPredicted RBP9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 AGMOQ6ZNB7 445 aa9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 C12orf50Q8NA57 414 aaPredicted RBP9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 TMEM87AQ8NBN3 555 aa9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 WDR89Q96FK6 387 aaPredicted RBP9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 RAD18Q9NS91 495 aa9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 KIAA1522Q9P206 1035 aaPredicted RBP9.62□□□□□ -0.87
CCDC88A-206ENST00000430086 RECKO95980 971 aa9.61□□□□□ -0.87
CCDC88A-206ENST00000430086 ADH5P11766 374 aa9.61□□□□□ -0.87
CCDC88A-206ENST00000430086 LIG1P18858 919 aa9.61□□□□□ -0.87
CCDC88A-206ENST00000430086 PREPP48147 710 aa9.61□□□□□ -0.87
CCDC88A-206ENST00000430086 SOX4Q06945 474 aaPredicted RBP9.61□□□□□ -0.87
CCDC88A-206ENST00000430086 RSRP1Q9BUV0 290 aa9.61□□□□□ -0.87
CCDC88A-206ENST00000430086 SART1O43290 800 aaKnown RBP9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 SLFN14P0C7P3 912 aa9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 DOC2BQ14184 412 aa9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 ARMC10Q8N2F6 343 aa9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 GPBAR1Q8TDU6 330 aa9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 TP53INP1Q96A56 240 aa9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 PCDHGC5Q9Y5F6 944 aa9.6□□□□□ -0.87
CCDC88A-206ENST00000430086 DRD2P14416 443 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 PWP1Q13610 501 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 TSNAXIP1Q2TAA8 658 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 AKAP4Q5JQC9 854 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 MPRIPQ6WCQ1 1025 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 ERMP1Q7Z2K6 904 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 C2CD4AQ8NCU7 369 aaPredicted RBP9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 MYRFLQ96LU7 910 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 GSX1Q9H4S2 264 aaPredicted RBP9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 METTL5Q9NRN9 209 aaKnown RBP9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 HIF3AQ9Y2N7 669 aa9.59□□□□□ -0.87
CCDC88A-206ENST00000430086 MAP3K11Q16584 847 aa9.58□□□□□ -0.88
CCDC88A-206ENST00000430086 PHC3Q8NDX5 983 aa9.58□□□□□ -0.88
CCDC88A-206ENST00000430086 UTP4Q969X6 686 aaKnown RBP9.58□□□□□ -0.88
CCDC88A-206ENST00000430086 TMPRSS2O15393 492 aa9.57□□□□□ -0.88
CCDC88A-206ENST00000430086 H2AFB1P0C5Y9 115 aa9.57□□□□□ -0.88
CCDC88A-206ENST00000430086 H2AFB2P0C5Z0 115 aa9.57□□□□□ -0.88
CCDC88A-206ENST00000430086 NKAPLQ5M9Q1 402 aa9.57□□□□□ -0.88
CCDC88A-206ENST00000430086 RELL1Q8IUW5 271 aa9.57□□□□□ -0.88
CCDC88A-206ENST00000430086 CRIM1Q9NZV1 1036 aa9.57□□□□□ -0.88
CCDC88A-206ENST00000430086 PPP1R9AQ9ULJ8 1098 aa9.57□□□□□ -0.88
CCDC88A-206ENST00000430086 DHX15O43143 795 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 GAS2O43903 313 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 TFE3P19532 575 aaPredicted RBP9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 LMNB1P20700 586 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 FANCCQ00597 558 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 ID3Q02535 119 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 RSPO4Q2I0M5 234 aaPredicted RBP9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 ZC3H12AQ5D1E8 599 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 HS2ST1Q7LGA3 356 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 GAL3ST3Q96A11 431 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 ZNF428Q96B54 188 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 ACSBG1Q96GR2 724 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 TMEM74Q96NL1 305 aa9.56□□□□□ -0.88
CCDC88A-206ENST00000430086 SCAMP3O14828 347 aaKnown RBP9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 ZNF76P36508 570 aa9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 PRR23CQ6ZRP0 262 aa9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 FAM20CQ8IXL6 584 aa9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 AP4E1Q9UPM8 1137 aa9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 TLR6Q9Y2C9 796 aa9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 PCDHB5Q9Y5E4 795 aa9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 ACTL7BQ9Y614 415 aa9.55□□□□□ -0.88
CCDC88A-206ENST00000430086 BMP3P12645 472 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 LMNB2Q03252 620 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 PTPN11Q06124 597 aaPredicted RBP9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 DYMQ7RTS9 669 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 CCDC84Q86UT8 332 aaPredicted RBP9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 TRIM42Q8IWZ5 723 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 RHOVQ96L33 236 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 MIR1-1HGQ9H1L0 117 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 ATXN3LQ9H3M9 355 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 GGT7Q9UJ14 662 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 PCDHA4Q9UN74 947 aa9.54□□□□□ -0.88
CCDC88A-206ENST00000430086 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.53□□□□□ -0.88
CCDC88A-206ENST00000430086 GBP2P32456 591 aaPredicted RBP9.53□□□□□ -0.88
CCDC88A-206ENST00000430086 ERVK-24P63145 666 aa9.53□□□□□ -0.88
CCDC88A-206ENST00000430086 EZH1Q92800 747 aaPredicted RBP9.53□□□□□ -0.88
CCDC88A-206ENST00000430086 FANCD2OSQ96PS1 177 aa9.53□□□□□ -0.88
CCDC88A-206ENST00000430086 DISC1Q9NRI5 854 aa9.53□□□□□ -0.88
CCDC88A-206ENST00000430086 KBTBD4Q9NVX7 518 aa9.53□□□□□ -0.88
CCDC88A-206ENST00000430086 RAXQ9Y2V3 346 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms