RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 OFD1O75665 1012 aa14.93□□□□□ -0.02
PTCH1-207ENST00000429896 CCDC148Q8NFR7 591 aa14.93□□□□□ -0.02
PTCH1-207ENST00000429896 CELF1Q92879 486 aaKnown RBP14.93□□□□□ -0.02
PTCH1-207ENST00000429896 GPR101Q96P66 508 aaPredicted RBP14.93□□□□□ -0.02
PTCH1-207ENST00000429896 PDE6AP16499 860 aa14.93□□□□□ -0.02
PTCH1-207ENST00000429896 COL23A1Q86Y22 540 aaPredicted RBP14.93□□□□□ -0.02
PTCH1-207ENST00000429896 BAG4O95429 457 aaKnown RBP14.93□□□□□ -0.02
PTCH1-207ENST00000429896 BMP2KQ9NSY1 1161 aaPredicted RBP14.93□□□□□ -0.02
PTCH1-207ENST00000429896 MINPP1Q9UNW1 487 aa14.93□□□□□ -0.02
PTCH1-207ENST00000429896 GUCY1B3Q02153 619 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 HEATR3Q7Z4Q2 680 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 ZHX3Q9H4I2 956 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 KDM6AO15550 1401 aaPredicted RBP14.92□□□□□ -0.02
PTCH1-207ENST00000429896 SSBP05455 408 aaKnown RBP eCLIP14.92□□□□□ -0.02
PTCH1-207ENST00000429896 PARP1P09874 1014 aaKnown RBP14.92□□□□□ -0.02
PTCH1-207ENST00000429896 CHMP4BP1P59074 171 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 TCEANC2Q96MN5 208 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 RNF181Q9P0P0 153 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 DBNLQ9UJU6 430 aaKnown RBP14.92□□□□□ -0.02
PTCH1-207ENST00000429896 TMEM266Q2M3C6 531 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 EPHA10Q5JZY3 1008 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 CRAMP1Q96RY5 1269 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 NRXN3Q9Y4C0 1643 aa14.92□□□□□ -0.02
PTCH1-207ENST00000429896 POLA2Q14181 598 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 DHX32Q7L7V1 743 aaKnown RBP14.91□□□□□ -0.02
PTCH1-207ENST00000429896 BEGAINQ9BUH8 593 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 AS3MTQ9HBK9 375 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 EDC3Q96F86 508 aaKnown RBP14.91□□□□□ -0.02
PTCH1-207ENST00000429896 RAB34Q9BZG1 259 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 MTFR1LQ9H019 292 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 RBM27Q9P2N5 1060 aaKnown RBP14.91□□□□□ -0.02
PTCH1-207ENST00000429896 B4DLN1 442 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 MRPL12P52815 198 aaKnown RBP14.91□□□□□ -0.02
PTCH1-207ENST00000429896 CHST3Q7LGC8 479 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 ZKSCAN3Q9BRR0 538 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 PRPF40AO75400 957 aaKnown RBP14.91□□□□□ -0.02
PTCH1-207ENST00000429896 SMC2O95347 1197 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 CTDSPL2Q05D32 466 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 TANGO6Q9C0B7 1094 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 NWD1Q149M9 1564 aa14.91□□□□□ -0.02
PTCH1-207ENST00000429896 ECE2O60344 883 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 GRIN3BO60391 1043 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 GPSM2P81274 684 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 GJB2P29033 226 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 AOC3Q16853 763 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 MNS1Q8NEH6 495 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 SMARCC2Q8TAQ2 1214 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 RBM28Q9NW13 759 aaKnown RBP14.9□□□□□ -0.02
PTCH1-207ENST00000429896 TLR7Q9NYK1 1049 aaKnown RBP14.9□□□□□ -0.02
PTCH1-207ENST00000429896 B4E1Z4 1266 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 BCL9O00512 1426 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 NAT10Q9H0A0 1025 aaKnown RBP14.9□□□□□ -0.02
PTCH1-207ENST00000429896 GOPCQ9HD26 462 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 ZNF277Q9NRM2 450 aaPredicted RBP14.9□□□□□ -0.02
PTCH1-207ENST00000429896 COL3A1P02461 1466 aaPredicted RBP14.9□□□□□ -0.02
PTCH1-207ENST00000429896 PRDM1O75626 825 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 FERMT3Q86UX7 667 aa14.9□□□□□ -0.02
PTCH1-207ENST00000429896 CLRN2A0PK11 232 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 NAPAP54920 295 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 CIZ1Q9ULV3 898 aaPredicted RBP14.89□□□□□ -0.03
PTCH1-207ENST00000429896 PLSCR1O15162 318 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 PPARAQ07869 468 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 CAMTA1Q9Y6Y1 1673 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 PPP1R12BO60237 982 aaPredicted RBP14.89□□□□□ -0.03
PTCH1-207ENST00000429896 TBC1D32Q96NH3 1257 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 PLA2G12BQ9BX93 195 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 ROBO1Q9Y6N7 1651 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 KDM2BQ8NHM5 1336 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 MYO3BQ8WXR4 1341 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 MBD3O95983 291 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 UBE3CQ15386 1083 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 DSCC1Q9BVC3 393 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 ZYXQ15942 572 aaKnown RBP14.89□□□□□ -0.03
PTCH1-207ENST00000429896 SPC24Q8NBT2 197 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 STYK1Q6J9G0 422 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 POTEAQ6S8J7 498 aa14.89□□□□□ -0.03
PTCH1-207ENST00000429896 SLC27A2O14975 620 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 SGSM2O43147 1006 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 RUFY3Q7L099 469 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 TMEM87BQ96K49 555 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 LETM1O95202 739 aaPredicted RBP14.88□□□□□ -0.03
PTCH1-207ENST00000429896 NTSR2O95665 410 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 CEP57L1Q8IYX8 460 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 PPFIA3O75145 1194 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 FOXO4P98177 505 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 PODNQ7Z5L7 613 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 C6orf50Q9HD87 102 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 NALCNQ8IZF0 1738 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 CCDC39Q9UFE4 941 aa14.88□□□□□ -0.03
PTCH1-207ENST00000429896 GYS1P13807 737 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 GPCPD1Q9NPB8 672 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 DPEP1P16444 411 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 APOBRQ0VD83 1088 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 PPP4R3AQ6IN85 833 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 SCLT1Q96NL6 688 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 USP17L12C9JPN9 530 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 USP17L21D6R901 530 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 SF3B3Q15393 1217 aaKnown RBP14.87□□□□□ -0.03
PTCH1-207ENST00000429896 SUPT20HL1Q3ZLR7 823 aa14.87□□□□□ -0.03
PTCH1-207ENST00000429896 NECAB1Q8N987 351 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms