RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 SLC3A2P08195 630 aaKnown RBP11.13□□□□□ -0.63
HMGB4-201ENST00000425537 SYT1P21579 422 aa11.13□□□□□ -0.63
HMGB4-201ENST00000425537 EVCP57679 992 aa11.13□□□□□ -0.63
HMGB4-201ENST00000425537 LARP1BQ659C4 914 aaKnown RBP11.13□□□□□ -0.63
HMGB4-201ENST00000425537 MCTP1Q6DN14 999 aa11.13□□□□□ -0.63
HMGB4-201ENST00000425537 CPLX2Q6PUV4 134 aaKnown RBP11.13□□□□□ -0.63
HMGB4-201ENST00000425537 STOX1Q6ZVD7 989 aa11.13□□□□□ -0.63
HMGB4-201ENST00000425537 FAM184AQ8NB25 1140 aa11.13□□□□□ -0.63
HMGB4-201ENST00000425537 TBC1D22AQ8WUA7 517 aa11.13□□□□□ -0.63
HMGB4-201ENST00000425537 ZNF622Q969S3 477 aaKnown RBP eCLIP11.13□□□□□ -0.63
HMGB4-201ENST00000425537 ARMT1Q9H993 441 aa11.13□□□□□ -0.63
HMGB4-201ENST00000425537 ISY1Q9ULR0 285 aaKnown RBP11.13□□□□□ -0.63
HMGB4-201ENST00000425537 IQSEC3Q9UPP2 1182 aaPredicted RBP11.13□□□□□ -0.63
HMGB4-201ENST00000425537 ERICH2A1L162 156 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 PPEF1O14829 653 aaPredicted RBP11.12□□□□□ -0.63
HMGB4-201ENST00000425537 FOXP2O15409 715 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 UFL1O94874 794 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 LARGE1O95461 756 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 MBD3O95983 291 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 LDHBP07195 334 aaKnown RBP11.12□□□□□ -0.63
HMGB4-201ENST00000425537 YBX3P16989 372 aaKnown RBP eCLIP11.12□□□□□ -0.63
HMGB4-201ENST00000425537 HAND2P61296 217 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 TTLL5Q6EMB2 1281 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 MFSD6Q6ZSS7 791 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 DZIP1Q86YF9 867 aaKnown RBP11.12□□□□□ -0.63
HMGB4-201ENST00000425537 AMOTL1Q8IY63 956 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 MB21D2Q8IYB1 491 aaPredicted RBP11.12□□□□□ -0.63
HMGB4-201ENST00000425537 TMTC2Q8N394 836 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 RGS22Q8NE09 1264 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 TDRD7Q8NHU6 1098 aaKnown RBP11.12□□□□□ -0.63
HMGB4-201ENST00000425537 NSFL1CQ9UNZ2 370 aaKnown RBP11.12□□□□□ -0.63
HMGB4-201ENST00000425537 CD2APQ9Y5K6 639 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 TAF6LQ9Y6J9 622 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 DLEC1Q9Y238 1755 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 LRRC37AA6NMS7 1700 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 TIAM2Q8IVF5 1701 aa11.12□□□□□ -0.63
HMGB4-201ENST00000425537 BRCA1P38398 1863 aaKnown RBP11.11□□□□□ -0.63
HMGB4-201ENST00000425537 GSG1L2A8MUP6 293 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 CDKL5O76039 1030 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 BAG3O95817 575 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 F13A1P00488 732 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 KCNA3P22001 575 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 CHAF1AQ13111 956 aaPredicted RBP11.11□□□□□ -0.63
HMGB4-201ENST00000425537 GPR162Q16538 588 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 KLHL40Q2TBA0 621 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 AKNAD1Q5T1N1 836 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 OLFM4Q6UX06 510 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 SYNE3Q6ZMZ3 975 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 NECAB1Q8N987 351 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 STAG1Q8WVM7 1258 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 SYAP1Q96A49 352 aaPredicted RBP11.11□□□□□ -0.63
HMGB4-201ENST00000425537 MASTLQ96GX5 879 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 TCEANC2Q96MN5 208 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 EYA3Q99504 573 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 LARP6Q9BRS8 491 aaKnown RBP11.11□□□□□ -0.63
HMGB4-201ENST00000425537 ATP8A2Q9NTI2 1148 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 ANAPC4Q9UJX5 808 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 NAP1L2Q9ULW6 460 aaPredicted RBP11.11□□□□□ -0.63
HMGB4-201ENST00000425537 BCS1LQ9Y276 419 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 ZDHHC9Q9Y397 364 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 ATP6V0A2Q9Y487 856 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 DDX49Q9Y6V7 483 aaKnown RBP11.11□□□□□ -0.63
HMGB4-201ENST00000425537 CHD4Q14839 1912 aa11.11□□□□□ -0.63
HMGB4-201ENST00000425537 IRS2Q9Y4H2 1338 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 C6orf229H3BNL8 230 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 CPLX1O14810 134 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 SRGNP10124 158 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 PLCG2P16885 1265 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 DEKP35659 375 aaKnown RBP11.1□□□□□ -0.63
HMGB4-201ENST00000425537 GPSM2P81274 684 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 MECOMQ03112 1051 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 APOBRQ0VD83 1088 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 STK3Q13188 491 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 L1TD1Q5T7N2 865 aaKnown RBP11.1□□□□□ -0.63
HMGB4-201ENST00000425537 LCORLQ8N3X6 602 aa11.1□□□□□ -0.63
HMGB4-201ENST00000425537 NSUN4Q96CB9 384 aaKnown RBP11.1□□□□□ -0.63
HMGB4-201ENST00000425537 ANGEL1Q9UNK9 670 aaKnown RBP11.1□□□□□ -0.63
HMGB4-201ENST00000425537 SLX4Q8IY92 1834 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 COL1A1P02452 1464 aaPredicted RBP11.09□□□□□ -0.63
HMGB4-201ENST00000425537 VPS37CA5D8V6 355 aaPredicted RBP11.09□□□□□ -0.63
HMGB4-201ENST00000425537 H0YIN7 160 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 H3BQV1 296 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 IL1R1P14778 569 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 PDIA3P30101 505 aaKnown RBP11.09□□□□□ -0.63
HMGB4-201ENST00000425537 LIFRP42702 1097 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 RCAN1P53805 252 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 PKP1Q13835 747 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 GRIPAP1Q4V328 841 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 IFFO2Q5TF58 517 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 STYK1Q6J9G0 422 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 MPNDQ8N594 471 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 MIGA1Q8NAN2 632 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 SMARCC2Q8TAQ2 1214 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 ESR2Q92731 530 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 RIOK1Q9BRS2 568 aaKnown RBP11.09□□□□□ -0.63
HMGB4-201ENST00000425537 COA1Q9GZY4 146 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 ZSCAN16Q9H4T2 348 aaPredicted RBP11.09□□□□□ -0.63
HMGB4-201ENST00000425537 SUGT1Q9Y2Z0 365 aa11.09□□□□□ -0.63
HMGB4-201ENST00000425537 KLF18A0A0U1RQI7 1052 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 CCDC69A6NI79 296 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms