RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 RPS8P62241 208 aaKnown RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 PUM3Q15397 648 aaKnown RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 OTUD7BQ6GQQ9 843 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 CCAR1Q8IX12 1150 aaKnown RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 RPGRQ92834 1020 aaKnown RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 USP28Q96RU2 1077 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 PUS7LQ9H0K6 701 aaKnown RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 CTNNA3Q9UI47 895 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 POLRMTO00411 1230 aaKnown RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 FGAP02671 866 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 PHKA1P46020 1223 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 SLC15A2Q16348 729 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 TRIM5Q9C035 493 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 GOLGA6L6A8MZA4 724 aa12.46□□□□□ -0.41
CUX1-205ENST00000425244 RGL2O15211 777 aa12.46□□□□□ -0.41
CUX1-205ENST00000425244 ME1P48163 572 aa12.46□□□□□ -0.41
CUX1-205ENST00000425244 ZNF165P49910 485 aa12.46□□□□□ -0.41
CUX1-205ENST00000425244 NLGN1Q8N2Q7 840 aa12.46□□□□□ -0.41
CUX1-205ENST00000425244 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.46□□□□□ -0.41
CUX1-205ENST00000425244 KCNF1Q9H3M0 494 aa12.46□□□□□ -0.41
CUX1-205ENST00000425244 STK32BQ9NY57 414 aa12.46□□□□□ -0.41
CUX1-205ENST00000425244 GOLGA8BA8MQT2 603 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 PRC1O43663 620 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 PTGS1P23219 599 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 ADD1P35611 737 aaKnown RBP12.46□□□□□ -0.42
CUX1-205ENST00000425244 RALYLQ86SE5 291 aaKnown RBP12.46□□□□□ -0.42
CUX1-205ENST00000425244 LPIN2Q92539 896 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 FBXW7Q969H0 707 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 ZNF274Q96GC6 653 aaPredicted RBP12.46□□□□□ -0.42
CUX1-205ENST00000425244 AGXT2Q9BYV1 514 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 PYCARDQ9ULZ3 195 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 MINPP1Q9UNW1 487 aa12.46□□□□□ -0.42
CUX1-205ENST00000425244 KLF18A0A0U1RQI7 1052 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 FOXP2O15409 715 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 GPAA1O43292 621 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 ZFYP08048 801 aaPredicted RBP12.45□□□□□ -0.42
CUX1-205ENST00000425244 SLC5A1P13866 664 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 BCAMP50895 628 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 CCDC102BQ68D86 513 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 CCDC73Q6ZRK6 1079 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 APPBP2Q92624 585 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 ZNF396Q96N95 335 aaPredicted RBP12.45□□□□□ -0.42
CUX1-205ENST00000425244 CASZ1Q86V15 1759 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 A0A087WWV3 80 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 APPP05067 770 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 GOLPH3LQ9H4A5 285 aa12.45□□□□□ -0.42
CUX1-205ENST00000425244 BSDC1Q9NW68 430 aaPredicted RBP12.45□□□□□ -0.42
CUX1-205ENST00000425244 TNRC6CQ9HCJ0 1690 aaKnown RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 COL24A1Q17RW2 1714 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 LAMB2P55268 1798 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 CPLX1O14810 134 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 IDH1O75874 414 aaKnown RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 MCAMP43121 646 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 GYG1P46976 350 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 ANKIB1Q9P2G1 1089 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 RCOR1Q9UKL0 485 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 PARP3Q9Y6F1 533 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 ZNF213O14771 459 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 KINO60870 393 aaKnown RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 POLR3DP05423 398 aaPredicted RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 FDPSP14324 419 aaKnown RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 HMGB2P26583 209 aaKnown RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 RBM43Q6ZSC3 357 aaKnown RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 FSIP1Q8NA03 581 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 FLAD1Q8NFF5 587 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 ERCC4Q92889 916 aaPredicted RBP12.44□□□□□ -0.42
CUX1-205ENST00000425244 PDCL3Q9H2J4 239 aa12.44□□□□□ -0.42
CUX1-205ENST00000425244 SLC9C2Q5TAH2 1124 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 VPS37DQ86XT2 251 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 ARID3AQ99856 593 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.427e-7■■■□□ 15.6
CUX1-205ENST00000425244 GJB4Q9NTQ9 266 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 SALL1Q9NSC2 1324 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 LAMA4Q16363 1823 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 RTL9Q8NET4 1388 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 KLRK1P26718 216 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 CCDC186Q7Z3E2 898 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 TICAM2Q86XR7 235 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 NCOA7Q8NI08 942 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 C8orf76Q96K31 380 aa12.43□□□□□ -0.42
CUX1-205ENST00000425244 ORC3Q9UBD5 711 aaPredicted RBP12.43□□□□□ -0.42
CUX1-205ENST00000425244 GOLGA6L19H0YKK7 550 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 TPM3P06753 285 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 FGFR2P21802 821 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 SF3A1Q15459 793 aaKnown RBP12.42□□□□□ -0.42
CUX1-205ENST00000425244 C11orf57Q6ZUT1 292 aaPredicted RBP12.42□□□□□ -0.42
CUX1-205ENST00000425244 GPR101Q96P66 508 aaPredicted RBP12.42□□□□□ -0.42
CUX1-205ENST00000425244 NRBP1Q9UHY1 535 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 ZNF75DP51815 510 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 ANTXR2P58335 489 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 MB21D2Q8IYB1 491 aaPredicted RBP12.42□□□□□ -0.42
CUX1-205ENST00000425244 TDRD7Q8NHU6 1098 aaKnown RBP12.42□□□□□ -0.42
CUX1-205ENST00000425244 KIAA1524Q8TCG1 905 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 BBXQ8WY36 941 aaPredicted RBP12.42□□□□□ -0.42
CUX1-205ENST00000425244 TSC1Q92574 1164 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 DENND2AQ9ULE3 1009 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 JAG2Q9Y219 1238 aa12.42□□□□□ -0.42
CUX1-205ENST00000425244 LRMPQ12912 555 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 TRDNQ13061 729 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 STK38Q15208 465 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms