RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 CFAP45Q9UL16 551 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 FGFR2P21802 821 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 GRIN1Q05586 938 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 CDHR2Q9BYE9 1310 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 NUP188Q5SRE5 1749 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 BTBD18B2RXH4 712 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 ZBTB43O43298 467 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 KINO60870 393 aaKnown RBP13.9□□□□□ -0.18
PTPRN-204ENST00000423636 COBLO75128 1261 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 NOM1Q5C9Z4 860 aaKnown RBP13.9□□□□□ -0.18
PTPRN-204ENST00000423636 MFSD6Q6ZSS7 791 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 SLC12A7Q9Y666 1083 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 LAMA4Q16363 1823 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 ROBO1Q9Y6N7 1651 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 CCDC69A6NI79 296 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 KCNF1Q9H3M0 494 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 CLSTN2Q9H4D0 955 aa13.9□□□□□ -0.18
PTPRN-204ENST00000423636 ERVV-1B6SEH8 477 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 WDHD1O75717 1129 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-204ENST00000423636 KRT40Q6A162 431 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 ZNF274Q96GC6 653 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-204ENST00000423636 FOXN1O15353 648 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 HMGN5P82970 282 aaKnown RBP13.89□□□□□ -0.19
PTPRN-204ENST00000423636 LRRFIP1Q32MZ4 808 aaKnown RBP13.89□□□□□ -0.19
PTPRN-204ENST00000423636 RASGRP2Q7LDG7 609 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 GRAMD1CQ8IYS0 662 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 FBXO18Q8NFZ0 1043 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 MINPP1Q9UNW1 487 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 SPATA31A5Q5VU36 1347 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 SPATA31A7Q8IWB4 1347 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 VEGFAP15692 232 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-204ENST00000423636 SNW1Q13573 536 aaKnown RBP13.89□□□□□ -0.19
PTPRN-204ENST00000423636 AOPEPQ8N6M6 819 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 FAM200AQ8TCP9 573 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 OXER1Q8TDS5 423 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 ABCC12Q96J65 1359 aa13.89□□□□□ -0.19
PTPRN-204ENST00000423636 CCNL1Q9UK58 526 aaPredicted RBP13.89□□□□□ -0.19
PTPRN-204ENST00000423636 LAMB4A4D0S4 1761 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 MROH5Q6ZUA9 1318 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 BECN2A8MW95 431 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 IARSP41252 1262 aaKnown RBP13.88□□□□□ -0.19
PTPRN-204ENST00000423636 GRIK5Q16478 980 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 BCL2L12Q9HB09 334 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 LY9Q9HBG7 655 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 ANKIB1Q9P2G1 1089 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 PATL2C9JE40 543 aaKnown RBP13.88□□□□□ -0.19
PTPRN-204ENST00000423636 SH2B2O14492 632 aaPredicted RBP13.88□□□□□ -0.19
PTPRN-204ENST00000423636 ZPR1O75312 459 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 GOLGA8FQ08AF8 430 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 GOLGA8DPQ0D2H9 430 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 TTF1Q15361 905 aaPredicted RBP13.88□□□□□ -0.19
PTPRN-204ENST00000423636 DIXDC1Q155Q3 683 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 MYSM1Q5VVJ2 828 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 OLFM4Q6UX06 510 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 IGDCC4Q8TDY8 1250 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 ZNF384Q8TF68 577 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 SETDB2Q96T68 719 aa13.88□□□□□ -0.19
PTPRN-204ENST00000423636 ZSCAN16Q9H4T2 348 aaPredicted RBP13.88□□□□□ -0.19
PTPRN-204ENST00000423636 NUP98P52948 1817 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 CASP1P29466 404 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 NFIXQ14938 502 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 CCDC144BQ3MJ40 725 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 MEX3CQ5U5Q3 659 aaKnown RBP13.87□□□□□ -0.19
PTPRN-204ENST00000423636 CPVLQ9H3G5 476 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 DISP2A7MBM2 1401 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 UBR2Q8IWV8 1755 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 UQCRFS1P1P0C7P4 283 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 ARID4AP29374 1257 aaPredicted RBP13.87□□□□□ -0.19
PTPRN-204ENST00000423636 DPCR1Q3MIW9 517 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 ZSCAN25Q6NSZ9 544 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 ZNF592Q92610 1267 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 STAMQ92783 540 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 ALDH8A1Q9H2A2 487 aaPredicted RBP13.87□□□□□ -0.19
PTPRN-204ENST00000423636 FAM217BQ9NTX9 383 aaPredicted RBP13.87□□□□□ -0.19
PTPRN-204ENST00000423636 VPS54Q9P1Q0 977 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 USP21Q9UK80 565 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 USP17L12C9JPN9 530 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 USP17L21D6R901 530 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 SPTLC2O15270 562 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 SLURP2P0DP57 97 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 KIAA2012Q0VF49 1180 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 ZNF827Q17R98 1081 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 ARHGEF1Q92888 912 aaKnown RBP13.87□□□□□ -0.19
PTPRN-204ENST00000423636 FAM84BQ96KN1 310 aaPredicted RBP13.87□□□□□ -0.19
PTPRN-204ENST00000423636 AGXT2Q9BYV1 514 aa13.87□□□□□ -0.19
PTPRN-204ENST00000423636 MROH7-TTC4A0A0A0MT08 1334 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 SALL1Q9NSC2 1324 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.86□□□□□ -0.19
PTPRN-204ENST00000423636 UQCRHLA0A096LP55 91 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 UQCRHP07919 91 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 UBE3CQ15386 1083 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 TRMT1Q9NXH9 659 aaKnown RBP13.86□□□□□ -0.19
PTPRN-204ENST00000423636 ZNF219Q9P2Y4 722 aaPredicted RBP13.86□□□□□ -0.19
PTPRN-204ENST00000423636 ABCA3Q99758 1704 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 MAGEB6P1A0A0J9YX57 407 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 GOLGA6L19H0YKK7 550 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 KIF23Q02241 960 aaPredicted RBP13.86□□□□□ -0.19
PTPRN-204ENST00000423636 AKNAD1Q5T1N1 836 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 USP49Q70CQ1 688 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 LINC00301Q8NCQ3 95 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms