RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PLA2G12BQ9BX93 195 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 NDUFB9Q9Y6M9 179 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 NID2Q14112 1375 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 RGPD5Q99666 1765 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 PAPPAQ13219 1627 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 ERVV-2B6SEH9 535 aa12.68□□□□□ -0.38
LIMS1-207ENST00000422797 TIMM10P62072 90 aa12.68□□□□□ -0.38
LIMS1-207ENST00000422797 NAA30Q147X3 362 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-207ENST00000422797 WASHC4Q2M389 1173 aa12.68□□□□□ -0.38
LIMS1-207ENST00000422797 CCDC57Q2TAC2 916 aa12.68□□□□□ -0.38
LIMS1-207ENST00000422797 CCDC102BQ68D86 513 aa12.68□□□□□ -0.38
LIMS1-207ENST00000422797 KANK3Q6NY19 840 aa12.68□□□□□ -0.38
LIMS1-207ENST00000422797 MTA3Q9BTC8 594 aa12.68□□□□□ -0.38
LIMS1-207ENST00000422797 STX10O60499 249 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 FGAP02671 866 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 POLR3DP05423 398 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-207ENST00000422797 CSB-PGBD3P0DP91 1061 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 METAP2P50579 478 aaKnown RBP eCLIP12.67□□□□□ -0.38
LIMS1-207ENST00000422797 ARHGAP29Q52LW3 1261 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 ALG1Q9BT22 464 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 TSPYL1Q9H0U9 437 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 C19orf44Q9H6X5 657 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 V9GYY5 206 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-207ENST00000422797 NWD2Q9ULI1 1742 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 PCDH11XQ9BZA7 1347 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 PCDH11YQ9BZA8 1340 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 CYP27B1O15528 508 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 TADA3O75528 432 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 RCAN1P53805 252 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 ALX1Q15699 326 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 CFAP100Q494V2 611 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 VPS37DQ86XT2 251 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 GPR161Q8N6U8 529 aaKnown RBP12.67□□□□□ -0.38
LIMS1-207ENST00000422797 MLKLQ8NB16 471 aa12.67□□□□□ -0.38
LIMS1-207ENST00000422797 MROH7-TTC4A0A0A0MT08 1334 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 POTEB2H3BUK9 544 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 SH2B2O14492 632 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 GPAA1O43292 621 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 ZRANB2O95218 330 aaKnown RBP eCLIP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 CHGBP05060 677 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 PNMA6AP0CW24 399 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 LMOD1P29536 600 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 CLCN6P51797 869 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 ANTXR2P58335 489 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 FKBP4Q02790 459 aaKnown RBP eCLIP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 PTPAQ15257 358 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 UBE3CQ15386 1083 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 SAFBQ15424 915 aaKnown RBP eCLIP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 ERCC6LQ2NKX8 1250 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 KRT40Q6A162 431 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 TTLL5Q6EMB2 1281 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 KRBA2Q6ZNG9 492 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 SGMS1Q86VZ5 419 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 KRI1Q8N9T8 703 aaKnown RBP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 ZNF579Q8NAF0 562 aaKnown RBP12.66□□□□□ -0.38
LIMS1-207ENST00000422797 XAGE2Q96GT9 111 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 ISCA1Q9BUE6 129 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 CEP131Q9UPN4 1083 aa12.66□□□□□ -0.38
LIMS1-207ENST00000422797 KCPQ6ZWJ8 1503 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 KIF28PB7ZC32 967 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 PCCAP05165 728 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-207ENST00000422797 LIFRP42702 1097 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 GPS2Q13227 327 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 LRRC24Q50LG9 513 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 TNS2Q63HR2 1409 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 TRIM65Q6PJ69 517 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 CHST3Q7LGC8 479 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 CNNM3Q8NE01 707 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 ENOX1Q8TC92 643 aaKnown RBP12.65□□□□□ -0.38
LIMS1-207ENST00000422797 NAA15Q9BXJ9 866 aaKnown RBP12.65□□□□□ -0.38
LIMS1-207ENST00000422797 CNNM2Q9H8M5 875 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 ZNF446Q9NWS9 450 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIMS1-207ENST00000422797 TBC1D2BQ9UPU7 963 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 FHOD1Q9Y613 1164 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 MYH7P12883 1935 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 LTBP4Q8N2S1 1624 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 CDHR2Q9BYE9 1310 aa12.65□□□□□ -0.38
LIMS1-207ENST00000422797 TNS3Q68CZ2 1445 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 NBPF26B4DH59 902 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 BIN1O00499 593 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 FOXP2O15409 715 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 ZBTB43O43298 467 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 WDHD1O75717 1129 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-207ENST00000422797 CASQ1P31415 396 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 IARSP41252 1262 aaKnown RBP12.64□□□□□ -0.39
LIMS1-207ENST00000422797 ZC3H6P61129 1189 aaKnown RBP12.64□□□□□ -0.39
LIMS1-207ENST00000422797 TBX2Q13207 712 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-207ENST00000422797 TAF7LQ5H9L4 462 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 NT5DC1Q5TFE4 455 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 NBPF14Q5TI25 921 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 NBPF10Q6P3W6 841 aaKnown RBP12.64□□□□□ -0.39
LIMS1-207ENST00000422797 SHC4Q6S5L8 630 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 NUTM2AQ8IVF1 878 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-207ENST00000422797 REXO1L1PQ8IX06 675 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 TXLNBQ8N3L3 684 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 NBPF15Q8N660 670 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 RABGGTAQ92696 567 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 MAP3K14Q99558 947 aa12.64□□□□□ -0.39
LIMS1-207ENST00000422797 TEX13AQ9BXU3 409 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms