RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 AKAP2Q9Y2D5 859 aa12.27□□□□□ -0.44
USP54-204ENST00000422491 ZNF18P17022 549 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 GCKRQ14397 625 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 MTF1Q14872 753 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 TTC31Q49AM3 519 aaPredicted RBP12.27□□□□□ -0.45
USP54-204ENST00000422491 ZMYM1Q5SVZ6 1142 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 BRMS1Q9HCU9 246 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 ABCB6Q9NP58 842 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 MKRN1Q9UHC7 482 aaKnown RBP12.27□□□□□ -0.45
USP54-204ENST00000422491 CDC23Q9UJX2 597 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 UBR1Q8IWV7 1749 aa12.27□□□□□ -0.45
USP54-204ENST00000422491 PPP6R2O75170 966 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 CEP112Q8N8E3 955 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 PUF60Q9UHX1 559 aaKnown RBP12.26□□□□□ -0.45
USP54-204ENST00000422491 JRKLQ9Y4A0 524 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 RNMTO43148 476 aaKnown RBP12.26□□□□□ -0.45
USP54-204ENST00000422491 ERLIN1O75477 346 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 CCDC175P0C221 793 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 GUCY2CP25092 1073 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 CORO7P57737 925 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 PTPAQ15257 358 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 ZNF530Q6P9A1 599 aaPredicted RBP12.26□□□□□ -0.45
USP54-204ENST00000422491 LRRC31Q6UY01 552 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 PCDHA5Q9Y5H7 936 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 LTN1O94822 1766 aa12.26□□□□□ -0.45
USP54-204ENST00000422491 MLECQ14165 292 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 HSP90AA4PQ58FG1 418 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 RESP18Q5W5W9 173 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 WWC2Q6AWC2 1192 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 FAM71BQ8TC56 605 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 MAST3O60307 1309 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 CASP8Q14790 479 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 LONRF3Q496Y0 759 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 TTLL5Q6EMB2 1281 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 RIC3Q7Z5B4 369 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 SLC26A8Q96RN1 970 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP54-204ENST00000422491 PLEKHG1Q9ULL1 1385 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 PXDNQ92626 1479 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 OVOS2A0A0G2JMS6 1433 aa12.25□□□□□ -0.45
USP54-204ENST00000422491 DDX60Q8IY21 1712 aaKnown RBP12.25□□□□□ -0.45
USP54-204ENST00000422491 A0A0U1RQJ8 604 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 SOWAHDA6NJG2 315 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 GOLIM4O00461 696 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 VSNL1P62760 191 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 RABL6Q3YEC7 729 aaPredicted RBP12.24□□□□□ -0.45
USP54-204ENST00000422491 ANKRD24Q8TF21 1146 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 ATRIPQ8WXE1 791 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 PAG1Q9NWQ8 432 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 ADGRG1Q9Y653 693 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 GOLGA8BA8MQT2 603 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 TUBB4BP68371 445 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 MDM2Q00987 491 aaPredicted RBP12.24□□□□□ -0.45
USP54-204ENST00000422491 FMR1Q06787 632 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP54-204ENST00000422491 ARHGEF25Q86VW2 580 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 TICAM2Q86XR7 235 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 PPM1EQ8WY54 764 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 IP6K1Q92551 441 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 MAP3K14Q99558 947 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 TEX13AQ9BXU3 409 aaPredicted RBP12.24□□□□□ -0.45
USP54-204ENST00000422491 LZTFL1Q9NQ48 299 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 NFE2L3Q9Y4A8 694 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 NWD2Q9ULI1 1742 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 KLF18A0A0U1RQI7 1052 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 TUBB2AQ13885 445 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 RAD9BQ6WBX8 426 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 ABTB2Q8N961 1025 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 JMYQ8N9B5 988 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 CNNM3Q8NE01 707 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 CLIC6Q96NY7 704 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 PANX2Q96RD6 677 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 TUBB2BQ9BVA1 445 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 RAI14Q9P0K7 980 aa12.24□□□□□ -0.45
USP54-204ENST00000422491 C4AP0C0L4 1744 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 C4BP0C0L5 1744 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 FOXN1O15353 648 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 CPP00450 1065 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 NEXNQ0ZGT2 675 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 NR1I3Q14994 352 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 CCDC102BQ68D86 513 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 ELOA2Q8IYF1 753 aaPredicted RBP12.23□□□□□ -0.45
USP54-204ENST00000422491 ENOX1Q8TC92 643 aaKnown RBP12.23□□□□□ -0.45
USP54-204ENST00000422491 RGPD2P0DJD1 1756 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 KIF5CO60282 957 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 LTKP29376 864 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 VPS37DQ86XT2 251 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 MED15Q96RN5 788 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 METTL22Q9BUU2 404 aaPredicted RBP12.23□□□□□ -0.45
USP54-204ENST00000422491 MED4Q9NPJ6 270 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.23□□□□□ -0.45
USP54-204ENST00000422491 MAN1B1Q9UKM7 699 aa12.23□□□□□ -0.45
USP54-204ENST00000422491 SIPA1L3O60292 1781 aaPredicted RBP12.22□□□□□ -0.45
USP54-204ENST00000422491 TNRQ92752 1358 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 LRRIQ3A6PVS8 624 aaPredicted RBP12.22□□□□□ -0.45
USP54-204ENST00000422491 AKR1B15C9JRZ8 316 aaPredicted RBP12.22□□□□□ -0.45
USP54-204ENST00000422491 FOXP2O15409 715 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 TFRCP02786 760 aaKnown RBP12.22□□□□□ -0.45
USP54-204ENST00000422491 ATP2B1P20020 1258 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 PLEKHO1Q53GL0 409 aaPredicted RBP12.22□□□□□ -0.45
USP54-204ENST00000422491 MB21D2Q8IYB1 491 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms