RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 SALL1Q9NSC2 1324 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 IRS2Q9Y4H2 1338 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 M0R2C6 588 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 GPAA1O43292 621 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 HSP90AA1P07900 732 aaKnown RBP7.12□□□□□ -1.27
HMGB3-202ENST00000419110 GRIPAP1Q4V328 841 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 SLC9C2Q5TAH2 1124 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 SOGA3Q5TF21 947 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 CC2D2BQ6DHV5 1058 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 CCDC129Q6ZRS4 1044 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 FBXO33Q7Z6M2 555 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 MPNDQ8N594 471 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 MAGEB6Q8N7X4 407 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 WDR66Q8TBY9 1149 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 UPF1Q92900 1129 aaKnown RBP eCLIP7.12□□□□□ -1.27
HMGB3-202ENST00000419110 SNX21Q969T3 373 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 DSCC1Q9BVC3 393 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 RAI14Q9P0K7 980 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 ABCF2Q9UG63 623 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 WWC3Q9ULE0 1092 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 IQSEC3Q9UPP2 1182 aaPredicted RBP7.12□□□□□ -1.27
HMGB3-202ENST00000419110 K7ELQ4 463 aaPredicted RBP7.11□□□□□ -1.27
HMGB3-202ENST00000419110 MBD4O95243 580 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 ZBTB7AO95365 584 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 GNAT2P19087 354 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 PSMA5P28066 241 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 CHRNA5P30532 468 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 MCM2P49736 904 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 GSTO1P78417 241 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 PTH1RQ03431 593 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 R3HDM1Q15032 1099 aaKnown RBP7.11□□□□□ -1.27
HMGB3-202ENST00000419110 CCDC93Q567U6 631 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 CREB3L3Q68CJ9 461 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 NAA16Q6N069 864 aaPredicted RBP7.11□□□□□ -1.27
HMGB3-202ENST00000419110 CERS3Q8IU89 383 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 SUPT20HQ8NEM7 779 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 TBC1D16Q8TBP0 767 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 TBC1D22AQ8WUA7 517 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 IL17RAQ96F46 866 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 FAM84BQ96KN1 310 aaPredicted RBP7.11□□□□□ -1.27
HMGB3-202ENST00000419110 NOL10Q9BSC4 688 aaKnown RBP7.11□□□□□ -1.27
HMGB3-202ENST00000419110 CTNNA3Q9UI47 895 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 PALD1Q9ULE6 856 aa7.11□□□□□ -1.27
HMGB3-202ENST00000419110 SLC27A2O14975 620 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 LDHBP07195 334 aaKnown RBP7.1□□□□□ -1.27
HMGB3-202ENST00000419110 CASTP20810 708 aaKnown RBP7.1□□□□□ -1.27
HMGB3-202ENST00000419110 CYP7A1P22680 504 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 IMMTQ16891 758 aaKnown RBP7.1□□□□□ -1.27
HMGB3-202ENST00000419110 ARSIQ5FYB1 569 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 SLF2Q8IX21 1173 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 TTLL6Q8N841 843 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 MAP4K1Q92918 833 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 OSBP2Q969R2 916 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 JAKMIP1Q96N16 626 aaKnown RBP7.1□□□□□ -1.27
HMGB3-202ENST00000419110 GPR101Q96P66 508 aaPredicted RBP7.1□□□□□ -1.27
HMGB3-202ENST00000419110 SEC62Q99442 399 aaKnown RBP7.1□□□□□ -1.27
HMGB3-202ENST00000419110 KIF2CQ99661 725 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 TBC1D2Q9BYX2 928 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 NACAP1Q9BZK3 213 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 PDGFDQ9GZP0 370 aaPredicted RBP7.1□□□□□ -1.27
HMGB3-202ENST00000419110 COA1Q9GZY4 146 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 NAPBQ9H115 298 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 SNX14Q9Y5W7 946 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 SBF1O95248 1867 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 ATAD5Q96QE3 1844 aa7.1□□□□□ -1.27
HMGB3-202ENST00000419110 MYH4Q9Y623 1939 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 MROH7-TTC4A0A0A0MT08 1334 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 SIPA1L1O43166 1804 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 MAGEB6P1A0A0J9YX57 407 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 TCRBV5S4A2TA0A5A2 114 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 C2orf72A6NCS6 295 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 HSPD1P10809 573 aaKnown RBP7.09□□□□□ -1.27
HMGB3-202ENST00000419110 IL1R1P14778 569 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 TDO2P48775 406 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 NEK4P51957 841 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 BLOC1S2Q6QNY1 142 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 RALYLQ86SE5 291 aaKnown RBP7.09□□□□□ -1.27
HMGB3-202ENST00000419110 SLC51AQ86UW1 340 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 ZNF687Q8N1G0 1237 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 TDRD7Q8NHU6 1098 aaKnown RBP7.09□□□□□ -1.27
HMGB3-202ENST00000419110 FBXW7Q969H0 707 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 UPF3BQ9BZI7 483 aaKnown RBP7.09□□□□□ -1.27
HMGB3-202ENST00000419110 TM6SF1Q9BZW5 370 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 ZC3H12CQ9C0D7 883 aaKnown RBP7.09□□□□□ -1.27
HMGB3-202ENST00000419110 CD209Q9NNX6 404 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 POLLQ9UGP5 575 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 CYP46A1Q9Y6A2 500 aa7.09□□□□□ -1.27
HMGB3-202ENST00000419110 FAM205AQ6ZU69 1335 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 PSDA5PKW4 1024 aaPredicted RBP7.08□□□□□ -1.28
HMGB3-202ENST00000419110 KIF3CO14782 793 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 PPIP5K2O43314 1243 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 CHGBP05060 677 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 APPP05067 770 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 LDHCP07864 332 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 HMGB1P09429 215 aaKnown RBP7.08□□□□□ -1.28
HMGB3-202ENST00000419110 PRDX5P30044 214 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 TGFB2P61812 414 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 NECTIN1Q15223 517 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 ANKRD1Q15327 319 aa7.08□□□□□ -1.28
HMGB3-202ENST00000419110 MFSD14BQ5SR56 506 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms