RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ZNF592Q92610 1267 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 PPP1R13BQ96KQ4 1090 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 PAXBP1Q9Y5B6 917 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 FAM237AA0A1B0GTK4 181 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 TMEM232C9JQI7 657 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 NLRP12P59046 1061 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 SLC39A14Q15043 492 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 IMMTQ16891 758 aaKnown RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 DDX41Q9UJV9 622 aaKnown RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 CMA1P23946 247 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 PHKA1P46020 1223 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 TOB1P50616 345 aaPredicted RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 MDM2Q00987 491 aaPredicted RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 CCDC57Q2TAC2 916 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 TMEM139Q8IV31 216 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 CEP57L1Q8IYX8 460 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 ZBTB38Q8NAP3 1195 aaPredicted RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 LY9Q9HBG7 655 aa11.47□□□□□ -0.57
SS18-203ENST00000415083 ZMYM6O95789 1325 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 UBN2Q6ZU65 1347 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 PNOCQ13519 176 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 STK38Q15208 465 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 FBXO38Q6PIJ6 1188 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 NCOA7Q8NI08 942 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 KIF18AQ8NI77 898 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 CASZ1Q86V15 1759 aa11.46□□□□□ -0.57
SS18-203ENST00000415083 B4E1Z4 1266 aa11.46□□□□□ -0.58
SS18-203ENST00000415083 APOA5Q6Q788 366 aa11.46□□□□□ -0.58
SS18-203ENST00000415083 TOM1L2Q6ZVM7 507 aa11.46□□□□□ -0.58
SS18-203ENST00000415083 NLRP10Q86W26 655 aa11.46□□□□□ -0.58
SS18-203ENST00000415083 VPS37DQ86XT2 251 aa11.46□□□□□ -0.58
SS18-203ENST00000415083 TMX1Q9H3N1 280 aa11.46□□□□□ -0.58
SS18-203ENST00000415083 WDR19Q8NEZ3 1342 aa11.46□□□□□ -0.58
SS18-203ENST00000415083 BECN2A8MW95 431 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 ITGA6P23229 1130 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 GPTP24298 496 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 CHAF1AQ13111 956 aaPredicted RBP11.45□□□□□ -0.58
SS18-203ENST00000415083 LONRF3Q496Y0 759 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 CCDC158Q5M9N0 1113 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 KRT40Q6A162 431 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 TRIM65Q6PJ69 517 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 TMC6Q7Z403 805 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 STK11IPQ8N1F8 1099 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 CCDC112Q8NEF3 446 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 KCNG4Q8TDN1 519 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 SDF4Q9BRK5 362 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 A0A1B0GUL6 1792 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 L2HGDHQ9H9P8 463 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 ST7Q9NRC1 585 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 ZNF532Q9HCE3 1301 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 ZNF213O14771 459 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 LMOD1P29536 600 aaPredicted RBP11.45□□□□□ -0.58
SS18-203ENST00000415083 PTPN14Q15678 1187 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 ELF2Q15723 593 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 BRAPQ7Z569 592 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 ABCC12Q96J65 1359 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 PHLPP1O60346 1717 aa11.45□□□□□ -0.58
SS18-203ENST00000415083 TAF1P21675 1872 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 ZFYP08048 801 aaPredicted RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 IL2RBP14784 551 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 FGFR2P21802 821 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 SPECC1Q5M775 1068 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 SLC9C2Q5TAH2 1124 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 RESP18Q5W5W9 173 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 STRBPQ96SI9 672 aaKnown RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 ZNF330Q9Y3S2 320 aaPredicted RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 MORC2Q9Y6X9 1032 aaPredicted RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 PLCH1Q4KWH8 1693 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 NEMFO60524 1076 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 SLC3A2P08195 630 aaKnown RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 FANCCQ00597 558 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 ZNF512BQ96KM6 892 aaPredicted RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 ALG1Q9BT22 464 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 CARD10Q9BWT7 1032 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 FBXO3Q9UK99 471 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 ANGEL1Q9UNK9 670 aaKnown RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 MAP3K15Q6ZN16 1313 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 CDHR2Q9BYE9 1310 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 PDE6AP16499 860 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 CTDSPL2Q05D32 466 aa11.44□□□□□ -0.58
SS18-203ENST00000415083 GIGYF2Q6Y7W6 1299 aaKnown RBP11.44□□□□□ -0.58
SS18-203ENST00000415083 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.44□□□□□ -0.58
SS18-203ENST00000415083 MYH6P13533 1939 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 PRKAB2O43741 272 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 PRR29P0C7W0 189 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 ARID4AP29374 1257 aaPredicted RBP11.43□□□□□ -0.58
SS18-203ENST00000415083 CCDC102BQ68D86 513 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 REXO1L1PQ8IX06 675 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 HELBQ8NG08 1087 aaPredicted RBP11.43□□□□□ -0.58
SS18-203ENST00000415083 ZSWIM5Q9P217 1185 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 IMPACTQ9P2X3 320 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 AKAP2Q9Y2D5 859 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 SOS2Q07890 1332 aaPredicted RBP11.43□□□□□ -0.58
SS18-203ENST00000415083 WTIPA6NIX2 430 aaPredicted RBP11.43□□□□□ -0.58
SS18-203ENST00000415083 CTSWP56202 376 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 IFIT5Q13325 482 aaKnown RBP11.43□□□□□ -0.58
SS18-203ENST00000415083 PRDM11Q9NQV5 511 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 OGFRQ9NZT2 677 aa11.43□□□□□ -0.58
SS18-203ENST00000415083 WNT7AO00755 349 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 SLFN14P0C7P3 912 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms