RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 IQUBQ8NA54 791 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 UBA5Q9GZZ9 404 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 ITGB1BP2Q9UKP3 347 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 PHBP35232 272 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 CNPY4Q8N129 248 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 SECISBP2LQ93073 1101 aaKnown RBP14.38□□□□□ -0.11
COL6A3-206ENST00000409809 XAB2Q9HCS7 855 aaKnown RBP14.38□□□□□ -0.11
COL6A3-206ENST00000409809 SEPT10Q9P0V9 454 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 RGS16O15492 202 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-206ENST00000409809 HHATQ5VTY9 493 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 HELBQ8NG08 1087 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-206ENST00000409809 SSH1Q8WYL5 1049 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 TMX1Q9H3N1 280 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 ARHGAP4P98171 946 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 TYW1Q9NV66 732 aaKnown RBP14.37□□□□□ -0.11
COL6A3-206ENST00000409809 POTEB3A0JP26 581 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 POTEBQ6S5H4 581 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 PEG3Q9GZU2 1588 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 CTTNBP2Q8WZ74 1663 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 CCDC151A5D8V7 595 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 C8orf34Q49A92 452 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 TRIM27P14373 513 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 MLKLQ8NB16 471 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 TSC1Q92574 1164 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 SAR1BQ9Y6B6 198 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 SNAPC4Q5SXM2 1469 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 CALM1P0DP23 149 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 CALM2P0DP24 149 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 CALM3P0DP25 149 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 SLFNL1Q499Z3 407 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 ST13P4Q8IZP2 240 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-206ENST00000409809 OLFM3Q96PB7 478 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 ATP5HO75947 161 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 STK10O94804 968 aaKnown RBP14.37□□□□□ -0.11
COL6A3-206ENST00000409809 SYTL4Q96C24 671 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-206ENST00000409809 HAUS1Q96CS2 278 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 ANGPTL2Q9UKU9 493 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 NSD3Q9BZ95 1437 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 KIAA0586Q9BVV6 1533 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 IGSF22Q8N9C0 903 aa14.37□□□□□ -0.11
COL6A3-206ENST00000409809 SATB1Q01826 763 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 PHLPP2Q6ZVD8 1323 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 GFAPP14136 432 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 TRIM68Q6AZZ1 485 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 ARMC2Q8NEN0 867 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 BCAS4Q8TDM0 211 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 TMEM232C9JQI7 657 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 CHUKO15111 745 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 SPZ1Q9BXG8 430 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 USP16Q9Y5T5 823 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 ABCA10Q8WWZ4 1543 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 IFIT3O14879 490 aaKnown RBP14.36□□□□□ -0.11
COL6A3-206ENST00000409809 GDPD2Q9HCC8 539 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-206ENST00000409809 IGHMBP2P38935 993 aaKnown RBP14.36□□□□□ -0.11
COL6A3-206ENST00000409809 CCDC197Q8NCU1 140 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 CCT6BQ92526 530 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 AOX1Q06278 1338 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 NOP14P78316 857 aaKnown RBP14.36□□□□□ -0.11
COL6A3-206ENST00000409809 ITIH3Q06033 890 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 EXOC6BQ9Y2D4 811 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 FAM169AQ9Y6X4 670 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 TRIM75PA6NK02 468 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 TEX2Q8IWB9 1127 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 SPDL1Q96EA4 605 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 BATF3Q9NR55 127 aa14.36□□□□□ -0.11
COL6A3-206ENST00000409809 PSDA5PKW4 1024 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-206ENST00000409809 FGFR1OP2Q9NVK5 253 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 GIPC1O14908 333 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 APOBRQ0VD83 1088 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 PIK3R4Q99570 1358 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 NAP1L4Q99733 375 aaKnown RBP14.35□□□□□ -0.11
COL6A3-206ENST00000409809 NAA16Q6N069 864 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-206ENST00000409809 MRFAP1L1Q96HT8 127 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 BIVM-ERCC5R4GMW8 1640 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 KRT71Q3SY84 523 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 MFSD6Q6ZSS7 791 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 TRIM42Q8IWZ5 723 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 EFHD1Q9BUP0 239 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 RAD54L2Q9Y4B4 1467 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 SSH2Q76I76 1423 aa14.35□□□□□ -0.11
COL6A3-206ENST00000409809 SYNRGQ9UMZ2 1314 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 TLDC2A0PJX2 215 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 MAN1A1P33908 653 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 CLSTN2Q9H4D0 955 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 TMEM67Q5HYA8 995 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 CNNM4Q6P4Q7 775 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 NLRP7Q8WX94 980 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 SPG7Q9UQ90 795 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 STX2P32856 288 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 MPHOSPH6Q99547 160 aaKnown RBP14.34□□□□□ -0.11
COL6A3-206ENST00000409809 SOS1Q07889 1333 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-206ENST00000409809 NOP53Q9NZM5 478 aaKnown RBP14.34□□□□□ -0.11
COL6A3-206ENST00000409809 CCDC25Q86WR0 208 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 KIFC3Q9BVG8 833 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 SLC9C1Q4G0N8 1177 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 GRK7Q8WTQ7 553 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 TXNDC9O14530 226 aa14.34□□□□□ -0.11
COL6A3-206ENST00000409809 DNM1Q05193 864 aaKnown RBP14.34□□□□□ -0.11
COL6A3-206ENST00000409809 HEATR3Q7Z4Q2 680 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms