RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RAD18Q9NS91 495 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 HIF3AQ9Y2N7 669 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 DYNC1LI2O43237 492 aaPredicted RBP4.29□□□□□ -1.72
VPS13A-206ENST00000376646 LIG1P18858 919 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 DSC3Q14574 896 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 BCO2Q9BYV7 579 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 CCDC86Q9H6F5 360 aaKnown RBP4.29□□□□□ -1.72
VPS13A-206ENST00000376646 WWC3Q9ULE0 1092 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 PPP1R9AQ9ULJ8 1098 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 MAPK8P45983 427 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 DTHD1Q6ZMT9 781 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 SLC51AQ86UW1 340 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 STK35Q8TDR2 534 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 WDR18Q9BV38 432 aa4.29□□□□□ -1.72
VPS13A-206ENST00000376646 FAM170BA6NMN3 283 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 TREHO43280 583 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 AOC2O75106 756 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 TBC1D32Q96NH3 1257 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 SEMA6CQ9H3T2 930 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 NLRP2Q9NX02 1062 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 GPN3Q9UHW5 284 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-206ENST00000376646 AKAP2Q9Y2D5 859 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 KIAA1324LA8MWY0 1029 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-206ENST00000376646 FBXO24O75426 580 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 ASPAP45381 313 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 PLCB3Q01970 1234 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 ENOX2Q16206 610 aaKnown RBP4.28□□□□□ -1.72
VPS13A-206ENST00000376646 MPRIPQ6WCQ1 1025 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 PRKAG2Q9UGJ0 569 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 DAGLAQ9Y4D2 1042 aa4.28□□□□□ -1.72
VPS13A-206ENST00000376646 ZNF862O60290 1169 aa4.27□□□□□ -1.73
VPS13A-206ENST00000376646 SPINK2P20155 84 aa4.27□□□□□ -1.73
VPS13A-206ENST00000376646 PAOXQ6QHF9 649 aa4.27□□□□□ -1.73
VPS13A-206ENST00000376646 GATA6Q92908 595 aa4.27□□□□□ -1.73
VPS13A-206ENST00000376646 TRAK1Q9UPV9 953 aa4.27□□□□□ -1.73
VPS13A-206ENST00000376646 OAS3Q9Y6K5 1087 aaKnown RBP4.27□□□□□ -1.73
VPS13A-206ENST00000376646 PTPN12Q05209 780 aaKnown RBP4.26□□□□□ -1.73
VPS13A-206ENST00000376646 EZH1Q92800 747 aaPredicted RBP4.26□□□□□ -1.73
VPS13A-206ENST00000376646 OSBPL1AQ9BXW6 950 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 PIM2Q9P1W9 311 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 TMPRSS2O15393 492 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 AP3B2Q13367 1082 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 ZNF765Q7L2R6 523 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 ZAR1Q86SH2 424 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 KCNB2Q92953 911 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 OSBPL7Q9BZF2 842 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 ACSS3Q9H6R3 686 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 ATG3Q9NT62 314 aa4.26□□□□□ -1.73
VPS13A-206ENST00000376646 GSTP1P09211 210 aaKnown RBP4.25□□□□□ -1.73
VPS13A-206ENST00000376646 GRIK1P39086 918 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 GP2P55259 537 aaKnown RBP4.25□□□□□ -1.73
VPS13A-206ENST00000376646 TPTE2Q6XPS3 522 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 PDZD3Q86UT5 571 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 DTX1Q86Y01 620 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 C3orf58Q8NDZ4 430 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 DDX54Q8TDD1 881 aaKnown RBP4.25□□□□□ -1.73
VPS13A-206ENST00000376646 LRRC4CQ9HCJ2 640 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 LEMD3Q9Y2U8 911 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 PAGE1O75459 146 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 CDK5R2Q13319 367 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 RPS26P11Q5JNZ5 115 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-206ENST00000376646 SULF2Q8IWU5 870 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 C1GALT1Q9NS00 363 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 RNF19AQ9NV58 838 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 TMEM39AQ9NV64 488 aa4.25□□□□□ -1.73
VPS13A-206ENST00000376646 HCLS1P14317 486 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-206ENST00000376646 FMR1Q06787 632 aaKnown RBP eCLIP4.24□□□□□ -1.73
VPS13A-206ENST00000376646 MSMPQ1L6U9 139 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 RASIP1Q5U651 963 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 MAP1SQ66K74 1059 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-206ENST00000376646 INTS5Q6P9B9 1019 aaKnown RBP4.24□□□□□ -1.73
VPS13A-206ENST00000376646 GRIN3AQ8TCU5 1115 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 FANCD2OSQ96PS1 177 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 GSX1Q9H4S2 264 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-206ENST00000376646 CRIM1Q9NZV1 1036 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 PCDHGC5Q9Y5F6 944 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-206ENST00000376646 P4HBP07237 508 aaKnown RBP4.24□□□□□ -1.73
VPS13A-206ENST00000376646 FOSL1P15407 271 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 TTLL4Q14679 1199 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 SEZ6L2Q6UXD5 910 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 NFXL1Q6ZNB6 911 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 ASB16Q96NS5 453 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 YIPF2Q9BWQ6 316 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 CBX8Q9HC52 389 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 DISC1Q9NRI5 854 aa4.24□□□□□ -1.73
VPS13A-206ENST00000376646 CYP26A1O43174 497 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 MAP7Q14244 749 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 HP1BP3Q5SSJ5 553 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-206ENST00000376646 CSADQ9Y600 493 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 U3KQE9 123 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 RBAK-RBAKDNI3L0D1 243 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 ENC1O14682 589 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 EIF4EBP3O60516 100 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-206ENST00000376646 RNGTTO60942 597 aaKnown RBP4.23□□□□□ -1.73
VPS13A-206ENST00000376646 NEFMP07197 916 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 ID3Q02535 119 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 PPP2R3AQ06190 1150 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 KCNA1Q09470 495 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 FBLN7Q53RD9 439 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms