RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 SMTNL1A8MU46 457 aa9.14□□□□□ -0.95
USP48-203ENST00000374732 IFRD1O00458 451 aaPredicted RBP9.14□□□□□ -0.95
USP48-203ENST00000374732 KIAA0754O94854 1291 aa9.14□□□□□ -0.95
USP48-203ENST00000374732 RPN1P04843 607 aaKnown RBP9.14□□□□□ -0.95
USP48-203ENST00000374732 CYP1A2P05177 515 aa9.14□□□□□ -0.95
USP48-203ENST00000374732 MATR3P43243 847 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP48-203ENST00000374732 KRT72Q14CN4 511 aa9.14□□□□□ -0.95
USP48-203ENST00000374732 ANKRD18AQ8IVF6 992 aa9.14□□□□□ -0.95
USP48-203ENST00000374732 SCLT1Q96NL6 688 aa9.14□□□□□ -0.95
USP48-203ENST00000374732 DNAI2Q9GZS0 605 aa9.14□□□□□ -0.95
USP48-203ENST00000374732 NPC1L1Q9UHC9 1359 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 HSPA2P54652 639 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 PDE4BQ07343 736 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 PPP2R5CQ13362 524 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 PTPN14Q15678 1187 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 C10orf67Q8IYJ2 551 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 BEGAINQ9BUH8 593 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 PHACTR1Q9C0D0 580 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 ZNF304Q9HCX3 659 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 ANKIB1Q9P2G1 1089 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 BARX2Q9UMQ3 279 aaPredicted RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 NUDCQ9Y266 331 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 AKR1B10O60218 316 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 MAGEA10P43363 369 aaPredicted RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 EIF4A2Q14240 407 aaKnown RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 IQCB1Q15051 598 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 SRLQ86TD4 932 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 KIAA0825Q8IV33 1275 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 ARL6IP6Q8N6S5 226 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 CLIP3Q96DZ5 547 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 RSRC1Q96IZ7 334 aaKnown RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 VPS33BQ9H267 617 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 AASDHPPTQ9NRN7 309 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 XPO7Q9UIA9 1087 aaKnown RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 ATP8A1Q9Y2Q0 1164 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 MRFAP1Q9Y605 127 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 RASA4BC9J798 803 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 CHL1O00533 1208 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 TBX3O15119 743 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 GLULP15104 373 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 DCTN1Q14203 1278 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 RBBP5Q15291 538 aaKnown RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 C10orf76Q5T2E6 689 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 RNF214Q8ND24 703 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 TSC1Q92574 1164 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 TBC1D5Q92609 795 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 N4BP2L2Q92802 583 aaPredicted RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 PAWRQ96IZ0 340 aaKnown RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 RNPC3Q96LT9 517 aaKnown RBP9.13□□□□□ -0.95
USP48-203ENST00000374732 PPP1R9AQ9ULJ8 1098 aa9.13□□□□□ -0.95
USP48-203ENST00000374732 NHSL1Q5SYE7 1610 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 XRN1Q8IZH2 1706 aaKnown RBP9.12□□□□□ -0.95
USP48-203ENST00000374732 PYGBP11216 843 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 TRAPPC10P48553 1259 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 MYBPC3Q14896 1274 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 NOLC1Q14978 699 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP48-203ENST00000374732 CCDC80Q76M96 950 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 ASIC4Q96FT7 647 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 OSBPL5Q9H0X9 879 aaPredicted RBP9.12□□□□□ -0.95
USP48-203ENST00000374732 DNAJC25Q9H1X3 360 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 CNPY2Q9Y2B0 182 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 A6NCN8 305 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 MSNP26038 577 aaKnown RBP9.12□□□□□ -0.95
USP48-203ENST00000374732 TBC1D8BQ0IIM8 1120 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 PDE3BQ13370 1112 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 CCDC158Q5M9N0 1113 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 LILRB1Q8NHL6 650 aaPredicted RBP9.12□□□□□ -0.95
USP48-203ENST00000374732 DDX12PQ92771 950 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 KCTD5Q9NXV2 234 aa9.12□□□□□ -0.95
USP48-203ENST00000374732 COL22A1Q8NFW1 1626 aaPredicted RBP9.11□□□□□ -0.95
USP48-203ENST00000374732 TNFRSF10BO14763 440 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 RPL17P18621 184 aaKnown RBP9.11□□□□□ -0.95
USP48-203ENST00000374732 RCAN1P53805 252 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 COX10Q12887 443 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 MPP3Q13368 585 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 WTAPQ15007 396 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 SHROOM1Q2M3G4 852 aaPredicted RBP9.11□□□□□ -0.95
USP48-203ENST00000374732 TMEM151BQ8IW70 566 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 PANK3Q9H999 370 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 TRPV5Q9NQA5 729 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 GTF3C4Q9UKN8 822 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 COL16A1Q07092 1604 aaPredicted RBP9.11□□□□□ -0.95
USP48-203ENST00000374732 PPLO60437 1756 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 CLCN2P51788 898 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 HNRNPH2P55795 449 aaKnown RBP9.11□□□□□ -0.95
USP48-203ENST00000374732 UBASH3AP57075 661 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 GEMIN4P57678 1058 aaKnown RBP9.11□□□□□ -0.95
USP48-203ENST00000374732 BRD3Q15059 726 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 LRRC41Q15345 812 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 SASS6Q6UVJ0 657 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 SLC7A5P1Q8MH63 180 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 ANKRD49Q8WVL7 239 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 USP6NLQ92738 828 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 ZNF496Q96IT1 587 aaPredicted RBP9.11□□□□□ -0.95
USP48-203ENST00000374732 TCHPQ9BT92 498 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 PLEKHG1Q9ULL1 1385 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 MYOM1P52179 1685 aa9.11□□□□□ -0.95
USP48-203ENST00000374732 TMEM131LA2VDJ0 1609 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 TMEM238LA0A1B0GVL6 79 aa9.1□□□□□ -0.95
USP48-203ENST00000374732 FIBPO43427 364 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms