RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 PSMD6Q15008 389 aa9.72□□□□□ -0.85
SYNE1-206ENST00000367253 BRD3Q15059 726 aa9.72□□□□□ -0.85
SYNE1-206ENST00000367253 CFAP100Q494V2 611 aa9.72□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC83Q8IWF9 413 aa9.72□□□□□ -0.85
SYNE1-206ENST00000367253 PRPF38AQ8NAV1 312 aaKnown RBP9.72□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC110Q8TBZ0 833 aa9.72□□□□□ -0.85
SYNE1-206ENST00000367253 HTATIP2Q9BUP3 242 aa9.72□□□□□ -0.85
SYNE1-206ENST00000367253 BACH2Q9BYV9 841 aa9.72□□□□□ -0.85
SYNE1-206ENST00000367253 EIF2AK4Q9P2K8 1649 aaKnown RBP9.72□□□□□ -0.85
SYNE1-206ENST00000367253 TYW5A2RUC4 315 aaKnown RBP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 NBPF20Q3BBV1 942 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 AKAP4Q5JQC9 854 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 GSDMBQ8TAX9 411 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC114Q96M63 670 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 PAGR1Q9BTK6 254 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 SPINK5Q9NQ38 1064 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 V9GYY5 206 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 JCADQ9P266 1359 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 DPYSL4O14531 572 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 MARCKSP29966 332 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 GNPTABQ3T906 1256 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 GET4Q7L5D6 327 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 PNMA8AQ86V59 439 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 CXorf38Q8TB03 319 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 SLC16A10Q8TF71 515 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 CALML4Q96GE6 196 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 CCDC77Q9BR77 488 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 DDX23Q9BUQ8 820 aaKnown RBP9.71□□□□□ -0.85
SYNE1-206ENST00000367253 UBA5Q9GZZ9 404 aa9.71□□□□□ -0.85
SYNE1-206ENST00000367253 GOLGA6BA6NDN3 693 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 NFKBIAP25963 317 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 E2F4Q16254 413 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 NAP1L3Q99457 506 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-206ENST00000367253 XRCC6P12956 609 aaKnown RBP eCLIP9.71□□□□□ -0.86
SYNE1-206ENST00000367253 GFAPP14136 432 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 CTNNA2P26232 953 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 EIF5P55010 431 aaKnown RBP9.71□□□□□ -0.86
SYNE1-206ENST00000367253 NONOQ15233 471 aaKnown RBP eCLIP9.71□□□□□ -0.86
SYNE1-206ENST00000367253 SH2D4BQ5SQS7 431 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 IQCGQ9H095 443 aaKnown RBP9.71□□□□□ -0.86
SYNE1-206ENST00000367253 LMCD1Q9NZU5 365 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 STX8Q9UNK0 236 aa9.71□□□□□ -0.86
SYNE1-206ENST00000367253 GSTTP1A0A1W2PQM5 241 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 CCDC85CA6NKD9 419 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 RRS1Q15050 365 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 FASTKD5Q7L8L6 764 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 FAM212AQ96EL1 285 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 PYM1Q9BRP8 204 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 TPX2Q9ULW0 747 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 ZMYM3Q14202 1370 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 PRPF4BQ13523 1007 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 SPA17Q15506 151 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 CEP135Q66GS9 1140 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 SHQ1Q6PI26 577 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 ELMOD1Q8N336 334 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 GABPB2Q8TAK5 448 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 CACYBPQ9HB71 228 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 KRT10P13645 584 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 CIAPIN1Q6FI81 312 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 TCP11L1Q9NUJ3 509 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 KIF1CO43896 1103 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 NBPF9Q3BBW0 867 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 GBP7Q8N8V2 638 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 NSMCE1Q8WV22 266 aa9.7□□□□□ -0.86
SYNE1-206ENST00000367253 G3BP2Q9UN86 482 aaKnown RBP9.7□□□□□ -0.86
SYNE1-206ENST00000367253 SYCE3A1L190 88 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 VPS41P49754 854 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 SEMA3FQ13275 785 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 EXOC8Q8IYI6 725 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 CEP112Q8N8E3 955 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 ZNF397Q8NF99 534 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 NAA15Q9BXJ9 866 aaKnown RBP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 BSDC1Q9NW68 430 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 CHCHD3Q9NX63 227 aaKnown RBP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 KBTBD13C9JR72 458 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 HIP1RO75146 1068 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 GMNNO75496 209 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 USP14P54578 494 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 PRDM16Q9HAZ2 1276 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 DENND2AQ9ULE3 1009 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 RIMBP3CA6NJZ7 1639 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 RIMBP3BA6NNM3 1639 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 RIMBP3Q9UFD9 1639 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 DCDC2CA8MYV0 355 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 TMOD1P28289 359 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 CABLES1Q8TDN4 633 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 PIDD1Q9HB75 910 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 NPATQ14207 1427 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 MYCP01106 439 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 KLHL10Q6JEL2 608 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 CCDC121Q6ZUS5 278 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 ENGASEQ8NFI3 743 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 C16orf45Q96MC5 204 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 KDM6BO15054 1643 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 PSDA5PKW4 1024 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-206ENST00000367253 GAS8O95995 478 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 NLRX1Q86UT6 975 aa9.69□□□□□ -0.86
SYNE1-206ENST00000367253 YAF2Q8IY57 180 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms