RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 TMX1Q9H3N1 280 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 ABCC3O15438 1527 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 SYNCQ9H7C4 482 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 SLC27A2O14975 620 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 KRT2P35908 639 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 SPAG1Q07617 926 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 ARHGEF10LQ9HCE6 1279 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 AFF2P51816 1311 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 ASIC1P78348 528 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 USP48Q86UV5 1035 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 N4BP3O15049 544 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 RPS6KB1P23443 525 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 SPOUT1Q5T280 376 aaKnown RBP13.18□□□□□ -0.3
SYNE1-204ENST00000367248 EAF2Q96CJ1 260 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-204ENST00000367248 COMMD10Q9Y6G5 202 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 CTNNA2P26232 953 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 MFSD14BQ5SR56 506 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 GIMAP6Q6P9H5 292 aa13.18□□□□□ -0.3
SYNE1-204ENST00000367248 MTERF4Q7Z6M4 381 aaKnown RBP13.17□□□□□ -0.3
SYNE1-204ENST00000367248 ZNF532Q9HCE3 1301 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 CLRN2A0PK11 232 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 NOP56O00567 594 aaKnown RBP13.17□□□□□ -0.3
SYNE1-204ENST00000367248 NEMFO60524 1076 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 HECW2Q9P2P5 1572 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 PROSER3Q2NL68 480 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 AXDND1Q5T1B0 1012 aaPredicted RBP13.17□□□□□ -0.3
SYNE1-204ENST00000367248 RGS22Q8NE09 1264 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 USP40Q9NVE5 1235 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 ANGEL1Q9UNK9 670 aaKnown RBP13.17□□□□□ -0.3
SYNE1-204ENST00000367248 FAM193AP78312 1265 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 SEC24BO95487 1268 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 GSDMDP57764 484 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 MYO5CQ9NQX4 1742 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 ANKARQ7Z5J8 1434 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 USO1O60763 962 aaKnown RBP13.17□□□□□ -0.3
SYNE1-204ENST00000367248 SYT1P21579 422 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 PTPN14Q15678 1187 aa13.17□□□□□ -0.3
SYNE1-204ENST00000367248 SPATA31A3Q5VYP0 1347 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 KIF22Q14807 665 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 TMC6Q7Z403 805 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 KIF5CO60282 957 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 DHX58Q96C10 678 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 SNX14Q9Y5W7 946 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 PSMA7O14818 248 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 MAEAQ7L5Y9 396 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 ARAP3Q8WWN8 1544 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 KIFC2Q96AC6 838 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.16□□□□□ -0.3
SYNE1-204ENST00000367248 MCM7P33993 719 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 BRDTQ58F21 947 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-204ENST00000367248 USP37Q86T82 979 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 NAP1L4Q99733 375 aaKnown RBP13.16□□□□□ -0.3
SYNE1-204ENST00000367248 COPRSQ9NQ92 184 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 UVSSAQ2YD98 709 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 UNC5CLQ8IV45 518 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 DHX37Q8IY37 1157 aaKnown RBP13.16□□□□□ -0.3
SYNE1-204ENST00000367248 HOOK2Q96ED9 719 aa13.16□□□□□ -0.3
SYNE1-204ENST00000367248 UBXN4Q92575 508 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.15□□□□□ -0.3
SYNE1-204ENST00000367248 KDM2BQ8NHM5 1336 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 DEXIO95424 95 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 GYG1P46976 350 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 CNKSR1Q969H4 720 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 KIF4BQ2VIQ3 1234 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 MAP7D2Q96T17 732 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 A2ML1A8K2U0 1454 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 GOLGA6L10A6NI86 522 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 FAM200AQ8TCP9 573 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 DBNDD1Q9H9R9 158 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 RAD17O75943 681 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 RILPL1Q5EBL4 403 aa13.15□□□□□ -0.3
SYNE1-204ENST00000367248 IBTKQ9P2D0 1353 aaPredicted RBP13.15□□□□□ -0.3
SYNE1-204ENST00000367248 SPAG5Q96R06 1193 aa13.14□□□□□ -0.31
SYNE1-204ENST00000367248 V9GY48 417 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-204ENST00000367248 ATP2B4P23634 1241 aa13.14□□□□□ -0.31
SYNE1-204ENST00000367248 SETQ01105 290 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-204ENST00000367248 EDC3Q96F86 508 aaKnown RBP13.14□□□□□ -0.31
SYNE1-204ENST00000367248 ZCCHC11Q5TAX3 1644 aaKnown RBP13.14□□□□□ -0.31
SYNE1-204ENST00000367248 EN1Q05925 392 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-204ENST00000367248 ZSCAN23Q3MJ62 389 aa13.14□□□□□ -0.31
SYNE1-204ENST00000367248 LRSAM1Q6UWE0 723 aa13.14□□□□□ -0.31
SYNE1-204ENST00000367248 PPP2R5BQ15173 497 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 LRRC24Q50LG9 513 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 RNF123Q5XPI4 1314 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 ADCY5O95622 1261 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 SLC1A4P43007 532 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 DSCC1Q9BVC3 393 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 AKR1B10O60218 316 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 SERPINB2P05120 415 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 PRPF4BQ13523 1007 aaKnown RBP13.13□□□□□ -0.31
SYNE1-204ENST00000367248 ZNF853P0CG23 659 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 IQUBQ8NA54 791 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 RNF169Q8NCN4 708 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 KRT13P13646 458 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 DTHD1Q6ZMT9 781 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 GTPBP4Q9BZE4 634 aaKnown RBP13.13□□□□□ -0.31
SYNE1-204ENST00000367248 SRP68Q9UHB9 627 aaKnown RBP13.13□□□□□ -0.31
SYNE1-204ENST00000367248 GCC2Q8IWJ2 1684 aa13.13□□□□□ -0.31
SYNE1-204ENST00000367248 CHRNDQ07001 517 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 UBE4AQ14139 1066 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms