RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 KRTAP4-6Q9BYQ5 205 aa9.26□□□□□ -0.93
VPS13A-201ENST00000355766 USP42Q9H9J4 1324 aaKnown RBP9.26□□□□□ -0.93
VPS13A-201ENST00000355766 CNTNAP1P78357 1384 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 ANKRD26Q9UPS8 1709 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 PIK3CDO00329 1044 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 PRKCSHP14314 528 aaPredicted RBP9.25□□□□□ -0.93
VPS13A-201ENST00000355766 LMNB1P20700 586 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 SOX11P35716 441 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 SMTNP53814 917 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 C1orf229Q6ZS94 237 aaPredicted RBP9.25□□□□□ -0.93
VPS13A-201ENST00000355766 PODNQ7Z5L7 613 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 ABHD17AQ96GS6 310 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 CRISPLD1Q9H336 500 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 PANK3Q9H999 370 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 NDFIP2Q9NV92 336 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 MKRN1Q9UHC7 482 aaKnown RBP9.25□□□□□ -0.93
VPS13A-201ENST00000355766 COG6Q9Y2V7 657 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 KNSTRNQ9Y448 316 aa9.25□□□□□ -0.93
VPS13A-201ENST00000355766 KIF20BQ96Q89 1820 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 SBF1O95248 1867 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 SHISA8B8ZZ34 492 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 C2CD2LO14523 706 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 BNIP3LO60238 219 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 IGHA1P01876 353 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 FOXK2Q01167 660 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 TBC1D9Q6ZT07 1266 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 IFNL2Q8IZJ0 200 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 SERTAD1Q9UHV2 236 aa9.24□□□□□ -0.93
VPS13A-201ENST00000355766 ATXN7L1Q9ULK2 861 aaPredicted RBP9.24□□□□□ -0.93
VPS13A-201ENST00000355766 ADAMTS7Q9UKP4 1686 aa9.23□□□□□ -0.93
VPS13A-201ENST00000355766 TMEM229AB2RXF0 380 aa9.23□□□□□ -0.93
VPS13A-201ENST00000355766 POLRMTO00411 1230 aaKnown RBP9.23□□□□□ -0.93
VPS13A-201ENST00000355766 CTCFP49711 727 aaPredicted RBP9.23□□□□□ -0.93
VPS13A-201ENST00000355766 SNRPNP63162 240 aaKnown RBP9.23□□□□□ -0.93
VPS13A-201ENST00000355766 GALNT6Q8NCL4 622 aa9.23□□□□□ -0.93
VPS13A-201ENST00000355766 AIDAQ96BJ3 306 aa9.23□□□□□ -0.93
VPS13A-201ENST00000355766 POLR3GLQ9BT43 218 aa9.23□□□□□ -0.93
VPS13A-201ENST00000355766 NIFKQ9BYG3 293 aaKnown RBP9.23□□□□□ -0.93
VPS13A-201ENST00000355766 SRP68Q9UHB9 627 aaKnown RBP9.23□□□□□ -0.93
VPS13A-201ENST00000355766 DLEC1Q9Y238 1755 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 NFKBIEO00221 500 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 BMP4P12644 408 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 ATP4AP20648 1035 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 FGFR3P22607 806 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 CTBSQ01459 385 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 ZNF295-AS1Q8N0V1 137 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 MRS2Q9HD23 443 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 DNAAF2Q9NVR5 837 aaKnown RBP9.22□□□□□ -0.93
VPS13A-201ENST00000355766 TJP1Q07157 1748 aa9.22□□□□□ -0.93
VPS13A-201ENST00000355766 ERVV-2B6SEH9 535 aa9.21□□□□□ -0.94
VPS13A-201ENST00000355766 CRKLP46109 303 aaKnown RBP9.21□□□□□ -0.94
VPS13A-201ENST00000355766 PLA2G4EQ3MJ16 856 aa9.21□□□□□ -0.94
VPS13A-201ENST00000355766 C1orf216Q8TAB5 229 aa9.21□□□□□ -0.94
VPS13A-201ENST00000355766 EDARADDQ8WWZ3 215 aa9.21□□□□□ -0.94
VPS13A-201ENST00000355766 ABHD8Q96I13 439 aa9.21□□□□□ -0.94
VPS13A-201ENST00000355766 ZCCHC2Q9C0B9 1178 aaKnown RBP9.21□□□□□ -0.94
VPS13A-201ENST00000355766 GDF2Q9UK05 429 aaPredicted RBP9.21□□□□□ -0.94
VPS13A-201ENST00000355766 PCDHGA11Q9Y5H2 935 aa9.21□□□□□ -0.94
VPS13A-201ENST00000355766 NRXN2Q9P2S2 1712 aa9.21□□□□□ -0.94
VPS13A-201ENST00000355766 CDK2AP1O14519 115 aa9.2□□□□□ -0.94
VPS13A-201ENST00000355766 ITGB2P05107 769 aa9.2□□□□□ -0.94
VPS13A-201ENST00000355766 TM4SF1P30408 202 aa9.2□□□□□ -0.94
VPS13A-201ENST00000355766 ALG2Q9H553 416 aa9.2□□□□□ -0.94
VPS13A-201ENST00000355766 IQSEC3Q9UPP2 1182 aaPredicted RBP9.2□□□□□ -0.94
VPS13A-201ENST00000355766 USP3Q9Y6I4 520 aa9.2□□□□□ -0.94
VPS13A-201ENST00000355766 PASKQ96RG2 1323 aa9.2□□□□□ -0.94
VPS13A-201ENST00000355766 A6NJY4 79 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 HSP90AB1P08238 724 aaKnown RBP9.19□□□□□ -0.94
VPS13A-201ENST00000355766 SKIP12755 728 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 LBX1P52954 281 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 MTFR1Q15390 333 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 FIGNL1Q6PIW4 674 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 NLRP8Q86W28 1048 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 GOLGA6L1Q8N7Z2 621 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 TTLL6Q8N841 843 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 POM121Q96HA1 1249 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 PCDHGC4Q9Y5F7 938 aa9.19□□□□□ -0.94
VPS13A-201ENST00000355766 MYH14Q7Z406 1995 aaKnown RBP9.19□□□□□ -0.94
VPS13A-201ENST00000355766 PPM1GO15355 546 aaPredicted RBP9.18□□□□□ -0.94
VPS13A-201ENST00000355766 HSPA8P11142 646 aaKnown RBP9.18□□□□□ -0.94
VPS13A-201ENST00000355766 MLLT1Q03111 559 aaPredicted RBP9.18□□□□□ -0.94
VPS13A-201ENST00000355766 USPL1Q5W0Q7 1092 aa9.18□□□□□ -0.94
VPS13A-201ENST00000355766 CARMIL3Q8ND23 1372 aa9.18□□□□□ -0.94
VPS13A-201ENST00000355766 GGA1Q9UJY5 639 aa9.18□□□□□ -0.94
VPS13A-201ENST00000355766 HCN2Q9UL51 889 aa9.18□□□□□ -0.94
VPS13A-201ENST00000355766 THSD7BQ9C0I4 1608 aa9.17□□□□□ -0.94
VPS13A-201ENST00000355766 SOS1Q07889 1333 aaPredicted RBP9.17□□□□□ -0.94
VPS13A-201ENST00000355766 ZBED9Q6R2W3 1325 aa9.17□□□□□ -0.94
VPS13A-201ENST00000355766 A0A1W2PNR3 127 aa9.17□□□□□ -0.94
VPS13A-201ENST00000355766 PTCD1O75127 700 aaKnown RBP9.17□□□□□ -0.94
VPS13A-201ENST00000355766 CABP4P57796 275 aa9.17□□□□□ -0.94
VPS13A-201ENST00000355766 EML3Q32P44 896 aa9.17□□□□□ -0.94
VPS13A-201ENST00000355766 PNISRQ8TF01 805 aaKnown RBP9.17□□□□□ -0.94
VPS13A-201ENST00000355766 COL15A1P39059 1388 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 LTBP3Q9NS15 1303 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 TMEM88BA6NKF7 163 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 ATXN7O15265 892 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-201ENST00000355766 RGS19P49795 217 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 NFIXQ14938 502 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 ARSJQ5FYB0 599 aaPredicted RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms