RNA–Protein interactions for RNA: ENST00000334136.9

HDAC6-201, Transcript of histone deacetylase 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC6, Length 4,190 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-201ENST00000334136 AATFQ9NY61 560 aaKnown RBP eCLIP13.7□□□□□ -0.222e-7■■■■■ 44.3
HDAC6-201ENST00000334136 DLG5Q8TDM6 1919 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 CCDC66A2RUB6 948 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 ME1P48163 572 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 TEKT1Q969V4 418 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 COA1Q9GZY4 146 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 ARMT1Q9H993 441 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 CABP5Q9NP86 173 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 MRC1P22897 1456 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 CCDC171Q6TFL3 1326 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 TSPY2A6NKD2 308 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 GPSM2P81274 684 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 UPF1Q92900 1129 aaKnown RBP eCLIP13.7□□□□□ -0.22
HDAC6-201ENST00000334136 NAT10Q9H0A0 1025 aaKnown RBP13.7□□□□□ -0.22
HDAC6-201ENST00000334136 RBSNQ9H1K0 784 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 TFIP11Q9UBB9 837 aaKnown RBP13.7□□□□□ -0.22
HDAC6-201ENST00000334136 ATP6V0A2Q9Y487 856 aa13.7□□□□□ -0.22
HDAC6-201ENST00000334136 TNNI2P48788 182 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 GAS2L3Q86XJ1 694 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 STAP2Q9UGK3 403 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 SCNN1DP51172 638 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 SKIDA1Q1XH10 827 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 STYK1Q6J9G0 422 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 PROM2Q8N271 834 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 FAM227BQ96M60 508 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 GPAA1O43292 621 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 HMGB1P09429 215 aaKnown RBP13.69□□□□□ -0.22
HDAC6-201ENST00000334136 VPS53Q5VIR6 699 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 CCDC129Q6ZRS4 1044 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 BCL2L12Q9HB09 334 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 HMG20BQ9P0W2 317 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 RAD50Q92878 1312 aa13.69□□□□□ -0.22
HDAC6-201ENST00000334136 IFIT3O14879 490 aaKnown RBP13.68□□□□□ -0.22
HDAC6-201ENST00000334136 MARCH6O60337 910 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 PI16Q6UXB8 463 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 ATP2B1P20020 1258 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 TRERF1Q96PN7 1200 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 CGNQ9P2M7 1197 aaKnown RBP13.68□□□□□ -0.22
HDAC6-201ENST00000334136 PDE6AP16499 860 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 MCM5P33992 734 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 NOLC1Q14978 699 aaKnown RBP eCLIP13.68□□□□□ -0.22
HDAC6-201ENST00000334136 ATG9AQ7Z3C6 839 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 TTC6Q86TZ1 520 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 KAZALD1Q96I82 304 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 ZNF277Q9NRM2 450 aaPredicted RBP13.68□□□□□ -0.22
HDAC6-201ENST00000334136 TRMT1Q9NXH9 659 aaKnown RBP13.68□□□□□ -0.22
HDAC6-201ENST00000334136 NF2P35240 595 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 CERS3Q8IU89 383 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 NCOA7Q8NI08 942 aa13.68□□□□□ -0.22
HDAC6-201ENST00000334136 AKT1S1Q96B36 256 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 CD209Q9NNX6 404 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 SRGNP10124 158 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 RASGRF1Q13972 1273 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 SAFBQ15424 915 aaKnown RBP eCLIP13.67□□□□□ -0.22
HDAC6-201ENST00000334136 AOC3Q16853 763 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 CIAPIN1Q6FI81 312 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 NEK1Q96PY6 1258 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 PODNQ7Z5L7 613 aa13.67□□□□□ -0.22
HDAC6-201ENST00000334136 CCAR1Q8IX12 1150 aaKnown RBP13.67□□□□□ -0.22
HDAC6-201ENST00000334136 PLCH1Q4KWH8 1693 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 USP17L3A6NCW0 530 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 USP17L4A6NCW7 530 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 TNNT1P13805 278 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 XBP1P17861 261 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 USP17L1Q7RTZ2 530 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 FEZ1Q99689 392 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 USP40Q9NVE5 1235 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 DTNBO60941 627 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 PAXIP1Q6ZW49 1069 aaPredicted RBP13.66□□□□□ -0.22
HDAC6-201ENST00000334136 TBC1D16Q8TBP0 767 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 ANTXR1Q9H6X2 564 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 SAP30BPQ9UHR5 308 aaKnown RBP13.66□□□□□ -0.22
HDAC6-201ENST00000334136 TGFB2P61812 414 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 STK38Q15208 465 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 TRIM22Q8IYM9 498 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 NOC3LQ8WTT2 800 aaKnown RBP13.66□□□□□ -0.22
HDAC6-201ENST00000334136 OSBPL3Q9H4L5 887 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 STX8Q9UNK0 236 aa13.66□□□□□ -0.22
HDAC6-201ENST00000334136 COL22A1Q8NFW1 1626 aaPredicted RBP13.66□□□□□ -0.22
HDAC6-201ENST00000334136 TM4SF1P30408 202 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 RBM25P49756 843 aaKnown RBP13.65□□□□□ -0.22
HDAC6-201ENST00000334136 USP48Q86UV5 1035 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 ESR2Q92731 530 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 NWD2Q9ULI1 1742 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 STX6O43752 255 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 PPFIA3O75145 1194 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 TPM1P09493 284 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 GSPT1P15170 499 aaKnown RBP13.65□□□□□ -0.22
HDAC6-201ENST00000334136 RFX5P48382 616 aaPredicted RBP13.65□□□□□ -0.22
HDAC6-201ENST00000334136 TCP10Q12799 353 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 CNPY2Q9Y2B0 182 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 EAPPQ56P03 285 aaPredicted RBP13.65□□□□□ -0.22
HDAC6-201ENST00000334136 KRT23Q9C075 422 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 LIMCH1Q9UPQ0 1083 aa13.65□□□□□ -0.22
HDAC6-201ENST00000334136 SGSM2O43147 1006 aa13.64□□□□□ -0.23
HDAC6-201ENST00000334136 CASP7P55210 303 aa13.64□□□□□ -0.23
HDAC6-201ENST00000334136 MAPKAPK5Q8IW41 473 aa13.64□□□□□ -0.23
HDAC6-201ENST00000334136 ZSCAN31Q96LW9 406 aaPredicted RBP13.64□□□□□ -0.23
HDAC6-201ENST00000334136 CNNM2Q9H8M5 875 aa13.64□□□□□ -0.23
HDAC6-201ENST00000334136 ABCC12Q96J65 1359 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms