RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 IGSF3O75054 1194 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 NEK4P51957 841 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 BECN1Q14457 450 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 IMMTQ16891 758 aaKnown RBP11.93□□□□□ -0.5
HMGB3-201ENST00000325307 DACT2Q5SW24 774 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 RIOK1Q9BRS2 568 aaKnown RBP11.93□□□□□ -0.5
HMGB3-201ENST00000325307 MROH7-TTC4A0A0A0MT08 1334 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 RBM5P52756 815 aaKnown RBP eCLIP11.93□□□□□ -0.5
HMGB3-201ENST00000325307 NFKBIBQ15653 356 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 BRCA1P38398 1863 aaKnown RBP11.93□□□□□ -0.5
HMGB3-201ENST00000325307 FOXP2O15409 715 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 CYP21A2P08686 494 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 CASTP20810 708 aaKnown RBP11.93□□□□□ -0.5
HMGB3-201ENST00000325307 BTDP43251 543 aa11.93□□□□□ -0.5
HMGB3-201ENST00000325307 ZNF213O14771 459 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 HSCBQ8IWL3 235 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 IFNL3Q8IZI9 196 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 GSG1L2A8MUP6 293 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 ST18O60284 1047 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 USP5P45974 858 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 TEKT1Q969V4 418 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 TAF6LQ9Y6J9 622 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 PSMD14O00487 310 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 ADCK5Q3MIX3 580 aa11.92□□□□□ -0.5
HMGB3-201ENST00000325307 EPB41L4AQ9HCS5 686 aaPredicted RBP11.92□□□□□ -0.5
HMGB3-201ENST00000325307 CCDC88AQ3V6T2 1871 aa11.91□□□□□ -0.5
HMGB3-201ENST00000325307 PSMA5P28066 241 aa11.91□□□□□ -0.5
HMGB3-201ENST00000325307 KRT32Q14532 448 aa11.91□□□□□ -0.5
HMGB3-201ENST00000325307 SH3RF3Q8TEJ3 882 aaPredicted RBP11.91□□□□□ -0.5
HMGB3-201ENST00000325307 DAGLAQ9Y4D2 1042 aa11.91□□□□□ -0.5
HMGB3-201ENST00000325307 SOCS7O14512 581 aa11.91□□□□□ -0.5
HMGB3-201ENST00000325307 LTBP3Q9NS15 1303 aa11.91□□□□□ -0.5
HMGB3-201ENST00000325307 CD2BP2O95400 341 aaKnown RBP11.9□□□□□ -0.5
HMGB3-201ENST00000325307 CPA1P15085 419 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 PLCG2P16885 1265 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 FKBP1AP62942 108 aaKnown RBP11.9□□□□□ -0.5
HMGB3-201ENST00000325307 NOL8Q76FK4 1167 aaKnown RBP11.9□□□□□ -0.5
HMGB3-201ENST00000325307 MINDY4BA8MYZ0 360 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 CIAPIN1Q6FI81 312 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 RSBN1LQ6PCB5 846 aaPredicted RBP11.9□□□□□ -0.5
HMGB3-201ENST00000325307 TEX11Q8IYF3 940 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 STK11IPQ8N1F8 1099 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 KCNB2Q92953 911 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 ZBTB12Q9Y330 459 aaPredicted RBP11.9□□□□□ -0.5
HMGB3-201ENST00000325307 CYP46A1Q9Y6A2 500 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 SCN9AQ15858 1988 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 GPR75-ASB3A0A0A6YYF3 556 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 CRKP46108 304 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 CXCL9Q07325 125 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 ALX1Q15699 326 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 BLOC1S2Q6QNY1 142 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 CERS3Q8IU89 383 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 TGFBRAP1Q8WUH2 860 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 SLKQ9H2G2 1235 aaPredicted RBP11.9□□□□□ -0.5
HMGB3-201ENST00000325307 MAST2Q6P0Q8 1798 aa11.9□□□□□ -0.5
HMGB3-201ENST00000325307 MYO3BQ8WXR4 1341 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 SLC4A8Q2Y0W8 1093 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 OGFOD1Q8N543 542 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 FAM163AQ96GL9 167 aaPredicted RBP11.89□□□□□ -0.51
HMGB3-201ENST00000325307 COL4A5P29400 1685 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 BRD2P25440 801 aaKnown RBP11.89□□□□□ -0.51
HMGB3-201ENST00000325307 EIF6P56537 245 aaKnown RBP11.89□□□□□ -0.51
HMGB3-201ENST00000325307 PPP4CP60510 307 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 NEK1Q96PY6 1258 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 TOMM22Q9NS69 142 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 RPAP1Q9BWH6 1393 aaPredicted RBP11.89□□□□□ -0.51
HMGB3-201ENST00000325307 FER1L6Q2WGJ9 1857 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 GAKO14976 1311 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 E7EWF7 191 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 VIL1P09327 827 aaKnown RBP11.89□□□□□ -0.51
HMGB3-201ENST00000325307 TNIP1Q15025 636 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 HHIPL2Q6UWX4 724 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 ATP8A2Q9NTI2 1148 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 MCM9Q9NXL9 1143 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 MYH2Q9UKX2 1941 aa11.89□□□□□ -0.51
HMGB3-201ENST00000325307 CTDSPL2Q05D32 466 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 TRDNQ13061 729 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 GPR162Q16538 588 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 TSGA10IPQ3SY00 556 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 RALYLQ86SE5 291 aaKnown RBP11.88□□□□□ -0.51
HMGB3-201ENST00000325307 MAPKAPK5Q8IW41 473 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 DCP1AQ9NPI6 582 aaPredicted RBP11.88□□□□□ -0.51
HMGB3-201ENST00000325307 USP40Q9NVE5 1235 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 HDAC9Q9UKV0 1011 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 GJA3Q9Y6H8 435 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 YBX3P16989 372 aaKnown RBP eCLIP11.88□□□□□ -0.51
HMGB3-201ENST00000325307 AMOTL1Q8IY63 956 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 TCEANC2Q96MN5 208 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 TM6SF1Q9BZW5 370 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 PDRG1Q9NUG6 133 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 USP17L12C9JPN9 530 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 USP17L21D6R901 530 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 LMNB1P20700 586 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 PICALMQ13492 652 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 STOX1Q6ZVD7 989 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 RUFY3Q7L099 469 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 ZSWIM6Q9HCJ5 1215 aa11.88□□□□□ -0.51
HMGB3-201ENST00000325307 ZMYM6O95789 1325 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 CYP2D7A0A087X1C5 515 aa11.87□□□□□ -0.51
HMGB3-201ENST00000325307 HSP90AA1P07900 732 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms