RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 NOC4LQ9BVI4 516 aaKnown RBP19.49■□□□□ 0.71
SYNPO-201ENST00000307662 FLT4P35916 1363 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 NPC1L1Q9UHC9 1359 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 NPATQ14207 1427 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 ABCC10Q5T3U5 1492 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 EEF2P13639 858 aaKnown RBP19.48■□□□□ 0.71
SYNPO-201ENST00000307662 FAM173BQ6P4H8 233 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 TMTC1Q8IUR5 882 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 NAP1L3Q99457 506 aaPredicted RBP19.48■□□□□ 0.71
SYNPO-201ENST00000307662 ATP6V0A2Q9Y487 856 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 GJC1P36383 396 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 TBC1D8BQ0IIM8 1120 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 GPR161Q8N6U8 529 aaKnown RBP19.48■□□□□ 0.71
SYNPO-201ENST00000307662 MLKLQ8NB16 471 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 WDR66Q8TBY9 1149 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 BRD1O95696 1058 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 PCK1P35558 622 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 CADPS2Q86UW7 1296 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 RPGRQ92834 1020 aaKnown RBP19.48■□□□□ 0.71
SYNPO-201ENST00000307662 SYNRGQ9UMZ2 1314 aa19.48■□□□□ 0.71
SYNPO-201ENST00000307662 PPFIA1Q13136 1202 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 CCDC152Q4G0S7 254 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 TSC1Q92574 1164 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 CABP5Q9NP86 173 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 RXRAP19793 462 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 TFCP2Q12800 502 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 SEL1L2Q5TEA6 688 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 A0A1W2PP64 1363 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 PLCB3Q01970 1234 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 UTP14CQ5TAP6 766 aaKnown RBP19.47■□□□□ 0.71
SYNPO-201ENST00000307662 SECISBP2LQ93073 1101 aaKnown RBP19.47■□□□□ 0.71
SYNPO-201ENST00000307662 VGLL3A8MV65 326 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 FMNL3Q8IVF7 1028 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 KIAA1524Q8TCG1 905 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 LRRC45Q96CN5 670 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.47■□□□□ 0.71
SYNPO-201ENST00000307662 DNMT1P26358 1616 aaKnown RBP19.47■□□□□ 0.71
SYNPO-201ENST00000307662 VWA3AA6NCI4 1184 aa19.47■□□□□ 0.71
SYNPO-201ENST00000307662 ATP2A2P16615 1042 aaKnown RBP19.47■□□□□ 0.71
SYNPO-201ENST00000307662 SF3B2Q13435 895 aaKnown RBP19.47■□□□□ 0.71
SYNPO-201ENST00000307662 RUFY4Q6ZNE9 571 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 CACNA2D3Q8IZS8 1091 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 ANAPC4Q9UJX5 808 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 BRD3Q15059 726 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 PHACTR3Q96KR7 559 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 KRT24Q2M2I5 525 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 CUTAO60888 179 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 CIB2O75838 187 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 GBP1P32455 592 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 SEPT6Q14141 434 aa19.46■□□□□ 0.71
SYNPO-201ENST00000307662 NAA16Q6N069 864 aaPredicted RBP19.46■□□□□ 0.71
SYNPO-201ENST00000307662 APBB1IPQ7Z5R6 666 aaPredicted RBP19.46■□□□□ 0.71
SYNPO-201ENST00000307662 SGSM2O43147 1006 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 CABS1Q96KC9 395 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 RABEP2Q9H5N1 569 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 ABCC1P33527 1531 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 NOL3O60936 208 aaKnown RBP19.45■□□□□ 0.7
SYNPO-201ENST00000307662 ZNF202O95125 648 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 VWA3BQ502W6 1294 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 RBM28Q9NW13 759 aaKnown RBP19.45■□□□□ 0.7
SYNPO-201ENST00000307662 MAGEB6P1A0A0J9YX57 407 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 SARNPP82979 210 aaKnown RBP19.45■□□□□ 0.7
SYNPO-201ENST00000307662 CHRNA2Q15822 529 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 NUP58Q9BVL2 599 aa19.45■□□□□ 0.7
SYNPO-201ENST00000307662 ACTN4O43707 911 aaKnown RBP19.44■□□□□ 0.7
SYNPO-201ENST00000307662 NOX5Q96PH1 765 aa19.44■□□□□ 0.7
SYNPO-201ENST00000307662 PLIN2Q99541 437 aa19.44■□□□□ 0.7
SYNPO-201ENST00000307662 HS2ST1Q7LGA3 356 aa19.44■□□□□ 0.7
SYNPO-201ENST00000307662 UTP11Q9Y3A2 253 aaKnown RBP19.44■□□□□ 0.7
SYNPO-201ENST00000307662 TRAF1Q13077 416 aa19.44■□□□□ 0.7
SYNPO-201ENST00000307662 RRP36Q96EU6 259 aaKnown RBP19.44■□□□□ 0.7
SYNPO-201ENST00000307662 RAPGEF1Q13905 1077 aa19.44■□□□□ 0.7
SYNPO-201ENST00000307662 ZNF174Q15697 407 aa19.44■□□□□ 0.7
SYNPO-201ENST00000307662 CWF19L2Q2TBE0 894 aaKnown RBP19.44■□□□□ 0.7
SYNPO-201ENST00000307662 CDC37L1Q7L3B6 337 aa19.44■□□□□ 0.7
SYNPO-201ENST00000307662 PLCD1P51178 756 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 PAK2Q13177 524 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 MTX1Q13505 466 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 TEX14Q8IWB6 1497 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 FAM13AO94988 1023 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 MAP2K2P36507 400 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 CROCCP2Q86T23 111 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 CCDC110Q8TBZ0 833 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 FEZ2Q9UHY8 353 aaPredicted RBP19.43■□□□□ 0.7
SYNPO-201ENST00000307662 GNA11P29992 359 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 NFE2L3Q9Y4A8 694 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 SV2BQ7L1I2 683 aa19.43■□□□□ 0.7
SYNPO-201ENST00000307662 C6orf229H3BNL8 230 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 PAK1Q13153 545 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 ADAMTS2O95450 1211 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 FYB2Q5VWT5 728 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 ZCRB1Q8TBF4 217 aaKnown RBP19.42■□□□□ 0.7
SYNPO-201ENST00000307662 POLR2DO15514 142 aaKnown RBP19.42■□□□□ 0.7
SYNPO-201ENST00000307662 NEDD9Q14511 834 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 TSNAXIP1Q2TAA8 658 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 MAP7D1Q3KQU3 841 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 CEP85LQ5SZL2 805 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 SND1Q7KZF4 910 aaKnown RBP eCLIP19.42■□□□□ 0.7
SYNPO-201ENST00000307662 ADGRL2O95490 1459 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 RPL13P26373 211 aaKnown RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms