RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 PRAMEF18Q5VWM3 479 aa15.49■□□□□ 0.07
SS18-202ENST00000269138 CDC37L1Q7L3B6 337 aa15.49■□□□□ 0.07
SS18-202ENST00000269138 SLF2Q8IX21 1173 aa15.49■□□□□ 0.07
SS18-202ENST00000269138 USP40Q9NVE5 1235 aa15.49■□□□□ 0.07
SS18-202ENST00000269138 PPP4R2Q9NY27 417 aa15.49■□□□□ 0.07
SS18-202ENST00000269138 PITPNM2Q9BZ72 1349 aa15.49■□□□□ 0.07
SS18-202ENST00000269138 MYO5AQ9Y4I1 1855 aaKnown RBP15.49■□□□□ 0.07
SS18-202ENST00000269138 GPR75-ASB3A0A0A6YYF3 556 aa15.48■□□□□ 0.07
SS18-202ENST00000269138 PDE6AP16499 860 aa15.48■□□□□ 0.07
SS18-202ENST00000269138 SULF1Q8IWU6 871 aa15.48■□□□□ 0.07
SS18-202ENST00000269138 PASKQ96RG2 1323 aa15.48■□□□□ 0.07
SS18-202ENST00000269138 TCP10L2B9ZVM9 353 aa15.48■□□□□ 0.07
SS18-202ENST00000269138 SLC9C2Q5TAH2 1124 aa15.48■□□□□ 0.07
SS18-202ENST00000269138 OSBPL3Q9H4L5 887 aa15.48■□□□□ 0.07
SS18-202ENST00000269138 POLR2AP24928 1970 aaKnown RBP15.47■□□□□ 0.07
SS18-202ENST00000269138 TCRBV5S4A2TA0A5A2 114 aa15.47■□□□□ 0.07
SS18-202ENST00000269138 RHBDL3P58872 404 aa15.47■□□□□ 0.07
SS18-202ENST00000269138 APOBEC3FQ8IUX4 373 aaKnown RBP15.47■□□□□ 0.07
SS18-202ENST00000269138 KBTBD3Q8NAB2 608 aa15.47■□□□□ 0.07
SS18-202ENST00000269138 MIGA1Q8NAN2 632 aa15.47■□□□□ 0.07
SS18-202ENST00000269138 AATFQ9NY61 560 aaKnown RBP eCLIP15.47■□□□□ 0.07
SS18-202ENST00000269138 MYH2Q9UKX2 1941 aa15.47■□□□□ 0.07
SS18-202ENST00000269138 ZNF532Q9HCE3 1301 aa15.46■□□□□ 0.07
SS18-202ENST00000269138 DYNLL1P63167 89 aaKnown RBP15.46■□□□□ 0.07
SS18-202ENST00000269138 NFIAQ12857 509 aa15.46■□□□□ 0.07
SS18-202ENST00000269138 RASA3Q14644 834 aa15.46■□□□□ 0.07
SS18-202ENST00000269138 DEFB129Q9H1M3 183 aa15.46■□□□□ 0.07
SS18-202ENST00000269138 CNTNAP1P78357 1384 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 IGSF3O75054 1194 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 ADD2P35612 726 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 CDAN1Q8IWY9 1227 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 SH3RF3Q8TEJ3 882 aaPredicted RBP15.45■□□□□ 0.06
SS18-202ENST00000269138 CDCA5Q96FF9 252 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 ZNF408Q9H9D4 720 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 TMOD2Q9NZR1 351 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 FAM198AQ9UFP1 575 aa15.45■□□□□ 0.06
SS18-202ENST00000269138 DOCK2Q92608 1830 aa15.44■□□□□ 0.06
SS18-202ENST00000269138 WDHD1O75717 1129 aaPredicted RBP15.44■□□□□ 0.06
SS18-202ENST00000269138 PPP4CP60510 307 aa15.44■□□□□ 0.06
SS18-202ENST00000269138 TCP10Q12799 353 aa15.44■□□□□ 0.06
SS18-202ENST00000269138 CST9Q5W186 159 aa15.44■□□□□ 0.06
SS18-202ENST00000269138 ZFPM1Q8IX07 1006 aa15.44■□□□□ 0.06
SS18-202ENST00000269138 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.44■□□□□ 0.06
SS18-202ENST00000269138 TMEM39BQ9GZU3 492 aa15.44■□□□□ 0.06
SS18-202ENST00000269138 MAST2Q6P0Q8 1798 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 CELF2O95319 508 aaKnown RBP15.43■□□□□ 0.06
SS18-202ENST00000269138 BAG3O95817 575 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 FKBP1CQ5VVH2 108 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 NOL10Q9BSC4 688 aaKnown RBP15.43■□□□□ 0.06
SS18-202ENST00000269138 FSD1Q9BTV5 496 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 DDX4Q9NQI0 724 aaKnown RBP15.43■□□□□ 0.06
SS18-202ENST00000269138 TRIM6-TRIM34B2RNG4 842 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 RNF113AO15541 343 aaKnown RBP15.43■□□□□ 0.06
SS18-202ENST00000269138 RGS3P49796 1198 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 TNFAIP1Q13829 316 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 UBE3CQ15386 1083 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 NBPF12Q5TAG4 269 aaPredicted RBP15.43■□□□□ 0.06
SS18-202ENST00000269138 TEX11Q8IYF3 940 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 EVI5LQ96CN4 794 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 TEPSINQ96N21 525 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 RIOK1Q9BRS2 568 aaKnown RBP15.43■□□□□ 0.06
SS18-202ENST00000269138 IDI2Q9BXS1 227 aa15.43■□□□□ 0.06
SS18-202ENST00000269138 RFX7Q2KHR2 1363 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 MAGEB6P1A0A0J9YX57 407 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 GSPT1P15170 499 aaKnown RBP15.42■□□□□ 0.06
SS18-202ENST00000269138 TNNI2P48788 182 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 APLP1P51693 650 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 HTRA3P83110 453 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 PICALMQ13492 652 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 TTC22Q5TAA0 569 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 ZSCAN25Q6NSZ9 544 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 TMED8Q6PL24 325 aaPredicted RBP15.42■□□□□ 0.06
SS18-202ENST00000269138 FAM83AQ86UY5 434 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 RILPL2Q969X0 211 aa15.42■□□□□ 0.06
SS18-202ENST00000269138 PUS7LQ9H0K6 701 aaKnown RBP15.42■□□□□ 0.06
SS18-202ENST00000269138 ECM29Q5VYK3 1845 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 PLCG2P16885 1265 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 LCORLQ8N3X6 602 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 TGFBRAP1Q8WUH2 860 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 FAM151AQ8WW52 585 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 OSBP2Q969R2 916 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 ARMT1Q9H993 441 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 FZD1Q9UP38 647 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 PPP2R3BQ9Y5P8 575 aa15.41■□□□□ 0.06
SS18-202ENST00000269138 MBD4O95243 580 aa15.4■□□□□ 0.06
SS18-202ENST00000269138 HSPA6P17066 643 aa15.4■□□□□ 0.06
SS18-202ENST00000269138 MOB2Q70IA6 237 aa15.4■□□□□ 0.06
SS18-202ENST00000269138 SH3BP5LQ7L8J4 393 aa15.4■□□□□ 0.06
SS18-202ENST00000269138 TMEM88BA6NKF7 163 aa15.39■□□□□ 0.05
SS18-202ENST00000269138 ENTPD3O75355 529 aa15.39■□□□□ 0.05
SS18-202ENST00000269138 ZFYP08048 801 aaPredicted RBP15.39■□□□□ 0.05
SS18-202ENST00000269138 PRKG1Q13976 671 aa15.39■□□□□ 0.05
SS18-202ENST00000269138 MAPKAPK5Q8IW41 473 aa15.39■□□□□ 0.05
SS18-202ENST00000269138 APPBP2Q92624 585 aa15.39■□□□□ 0.05
SS18-202ENST00000269138 SEC62Q99442 399 aaKnown RBP15.39■□□□□ 0.05
SS18-202ENST00000269138 SSC5DA1L4H1 1573 aa15.38■□□□□ 0.05
SS18-202ENST00000269138 DDTLA6NHG4 134 aaPredicted RBP15.38■□□□□ 0.05
SS18-202ENST00000269138 M0R2C6 588 aa15.38■□□□□ 0.05
SS18-202ENST00000269138 PRKAB2O43741 272 aa15.38■□□□□ 0.05
SS18-202ENST00000269138 SDSP20132 328 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms