RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MNAT1P51948 309 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 FANCCQ00597 558 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 CCDC122Q5T0U0 273 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 IGSF22Q8N9C0 903 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 RHOXF2Q9BQY4 288 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 CCDC77Q9BR77 488 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 IMPACTQ9P2X3 320 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 SH3TC1Q8TE82 1336 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 LDHBP07195 334 aaKnown RBP12.13□□□□□ -0.47
CD44-201ENST00000263398 PLCD1P51178 756 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 PICALMQ13492 652 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 SSH3Q8TE77 659 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 XAGE2Q96GT9 111 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 CAPZA3Q96KX2 299 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 PPP2R3AQ06190 1150 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 TRIM14Q14142 442 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 ZNF174Q15697 407 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 DENND2AQ9ULE3 1009 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 NSFL1CQ9UNZ2 370 aaKnown RBP12.13□□□□□ -0.47
CD44-201ENST00000263398 IKBKGQ9Y6K9 419 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 F8W031 263 aaPredicted RBP12.13□□□□□ -0.47
CD44-201ENST00000263398 EBAG9O00559 213 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 ZNF202O95125 648 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 GSPT1P15170 499 aaKnown RBP12.13□□□□□ -0.47
CD44-201ENST00000263398 ITGA6P23229 1130 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 TBC1D8BQ0IIM8 1120 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 ZC3H12CQ9C0D7 883 aaKnown RBP12.13□□□□□ -0.47
CD44-201ENST00000263398 HOMER2Q9NSB8 354 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 SSH2Q76I76 1423 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 PUM3Q15397 648 aaKnown RBP12.12□□□□□ -0.47
CD44-201ENST00000263398 MYRIPQ8NFW9 859 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 NSRP1Q9H0G5 558 aaKnown RBP12.12□□□□□ -0.47
CD44-201ENST00000263398 TUBB2AQ13885 445 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 TUBB2BQ9BVA1 445 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 USP44Q9H0E7 712 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 RIOK3O14730 519 aaKnown RBP12.12□□□□□ -0.47
CD44-201ENST00000263398 PHACTR2O75167 634 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 CHMP4BP1P59074 171 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 EIF4A1P60842 406 aaKnown RBP12.12□□□□□ -0.47
CD44-201ENST00000263398 PPP2R5BQ15173 497 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 HDXQ7Z353 690 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 VPS18Q9P253 973 aa12.12□□□□□ -0.47
CD44-201ENST00000263398 ATP5JP18859 108 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 PARP10Q53GL7 1025 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 OTUD7BQ6GQQ9 843 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 FERMT1Q9BQL6 677 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 STMN4Q9H169 189 aaPredicted RBP12.11□□□□□ -0.47
CD44-201ENST00000263398 TTF2Q9UNY4 1162 aaKnown RBP12.11□□□□□ -0.47
CD44-201ENST00000263398 PLEKHG3A1L390 1219 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 STAMBPO95630 424 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 CCT6AP40227 531 aaKnown RBP12.11□□□□□ -0.47
CD44-201ENST00000263398 A0A1W2PRG0 241 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 POLR2DO15514 142 aaKnown RBP12.11□□□□□ -0.47
CD44-201ENST00000263398 ARHGAP6O43182 974 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 RPL13P26373 211 aaKnown RBP12.11□□□□□ -0.47
CD44-201ENST00000263398 TNNC1P63316 161 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 SV2BQ7L1I2 683 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 NBPF11Q86T75 865 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 TTC6Q86TZ1 520 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 TRMT2AQ8IZ69 625 aaKnown RBP12.11□□□□□ -0.47
CD44-201ENST00000263398 PLIN2Q99541 437 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 LRRIQ1Q96JM4 1722 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 DCAF8L1A6NGE4 600 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 FAM13AO94988 1023 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 FMNL3Q8IVF7 1028 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 OGFOD1Q8N543 542 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 TSGA10Q9BZW7 698 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 SLC52A2Q9HAB3 445 aa12.11□□□□□ -0.47
CD44-201ENST00000263398 PDE8AO60658 829 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 NF2P35240 595 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 NLRP12P59046 1061 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 LETM2Q2VYF4 491 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 KRT40Q6A162 431 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 ZFP91Q96JP5 570 aaPredicted RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 NAP1L4Q99733 375 aaKnown RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 DSCC1Q9BVC3 393 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 V9GY48 417 aaPredicted RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 CDC42BPAQ5VT25 1732 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 ZCCHC11Q5TAX3 1644 aaKnown RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 JAK2O60674 1132 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 MRPL12P52815 198 aaKnown RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 CCDC65Q8IXS2 484 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 VPS16Q9H269 839 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 NFE2L3Q9Y4A8 694 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 MAGI2Q86UL8 1455 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 ATP2C2O75185 946 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 PARP1P09874 1014 aaKnown RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 U2AF2P26368 475 aaKnown RBP eCLIP12.1□□□□□ -0.47
CD44-201ENST00000263398 ZNF594Q96JF6 807 aaPredicted RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 PPP1R9BQ96SB3 815 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 RTCBQ9Y3I0 505 aaKnown RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 MRVI1Q9Y6F6 885 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 TRAF5O00463 557 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 WDHD1O75717 1129 aaPredicted RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 ME3Q16798 604 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 NAPGQ99747 312 aaPredicted RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 NOC4LQ9BVI4 516 aaKnown RBP12.1□□□□□ -0.47
CD44-201ENST00000263398 ARMT1Q9H993 441 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms