RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 LPIN2Q92539 896 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 AIDAQ96BJ3 306 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 ALG1Q9BT22 464 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 BCL9LQ86UU0 1499 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 SMTNL1A8MU46 457 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 ERVV-1B6SEH8 477 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 PHKA1P46020 1223 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 SLC39A14Q15043 492 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 FBXW7Q969H0 707 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 ZBTB1Q9Y2K1 713 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 MROH5Q6ZUA9 1318 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 BCL9O00512 1426 aa19.04■□□□□ 0.64
HOXD3-201ENST00000249440 AXDND1Q5T1B0 1012 aaPredicted RBP19.03■□□□□ 0.64
HOXD3-201ENST00000249440 APOA5Q6Q788 366 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 FILIP1Q7Z7B0 1213 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 DENND2AQ9ULE3 1009 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 FAM177BA6PVY3 158 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 B4E1Z4 1266 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 SKILP12757 684 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 GSDMDP57764 484 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 DPCR1Q3MIW9 517 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 SLC4A9Q96Q91 983 aa19.03■□□□□ 0.64
HOXD3-201ENST00000249440 STRBPQ96SI9 672 aaKnown RBP19.03■□□□□ 0.64
HOXD3-201ENST00000249440 TCRBV5S4A2TA0A5A2 114 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 PFKFB1P16118 471 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 ALX1Q15699 326 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 VPS37DQ86XT2 251 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 JMYQ8N9B5 988 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 WWC3Q9ULE0 1092 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 NEDD4P46934 1319 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 CCDC69A6NI79 296 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 ZBTB43O43298 467 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 IL6STP40189 918 aaPredicted RBP19.02■□□□□ 0.64
HOXD3-201ENST00000249440 NLRP12P59046 1061 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 TPM4P67936 248 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 GNL2Q13823 731 aaKnown RBP19.02■□□□□ 0.64
HOXD3-201ENST00000249440 KRT40Q6A162 431 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 DZIP3Q86Y13 1208 aaKnown RBP19.02■□□□□ 0.64
HOXD3-201ENST00000249440 TIGD1Q96MW7 591 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 IMPACTQ9P2X3 320 aa19.02■□□□□ 0.64
HOXD3-201ENST00000249440 PATL2C9JE40 543 aaKnown RBP19.01■□□□□ 0.63
HOXD3-201ENST00000249440 PPP6R2O75170 966 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 FGFR2P21802 821 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 ARID5BQ14865 1188 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 NFXL1Q6ZNB6 911 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 SGMS1Q86VZ5 419 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 MICU3Q86XE3 530 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 IGDCC4Q8TDY8 1250 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 AK7Q96M32 723 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 CHD4Q14839 1912 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 RXRAP19793 462 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 CDC27P30260 824 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 IARSP41252 1262 aaKnown RBP19.01■□□□□ 0.63
HOXD3-201ENST00000249440 MAP3K12Q12852 859 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 TRIM29Q14134 588 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 SPATA5Q8NB90 893 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 AIFM3Q96NN9 605 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 ARID3AQ99856 593 aa19.01■□□□□ 0.63
HOXD3-201ENST00000249440 ARAP2Q8WZ64 1704 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 WDHD1O75717 1129 aaPredicted RBP19■□□□□ 0.63
HOXD3-201ENST00000249440 NKX2-3Q8TAU0 364 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 SLC5A1P13866 664 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 MARCKSP29966 332 aaPredicted RBP19■□□□□ 0.63
HOXD3-201ENST00000249440 LIFRP42702 1097 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 SYKP43405 635 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 CCZ1BP86790 482 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 CCZ1P86791 482 aaPredicted RBP19■□□□□ 0.63
HOXD3-201ENST00000249440 TMEM67Q5HYA8 995 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 ZNF34Q8IZ26 560 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 IFNL3Q8IZI9 196 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 ANKRD7Q92527 254 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 PHKBQ93100 1093 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 OSBPL5Q9H0X9 879 aaPredicted RBP19■□□□□ 0.63
HOXD3-201ENST00000249440 NAPBQ9H115 298 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 LY9Q9HBG7 655 aa19■□□□□ 0.63
HOXD3-201ENST00000249440 SPATA31A1Q5TZJ5 1347 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 UBN2Q6ZU65 1347 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 SYCP1Q15431 976 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 NTRK3Q16288 839 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 CEP135Q66GS9 1140 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 CCDC112Q8NEF3 446 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 SYTL4Q96C24 671 aaPredicted RBP18.99■□□□□ 0.63
HOXD3-201ENST00000249440 CNNM2Q9H8M5 875 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 GOLGA8AA7E2F4 631 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 U2AF2P26368 475 aaKnown RBP eCLIP18.99■□□□□ 0.63
HOXD3-201ENST00000249440 NBPF11Q86T75 865 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 PDCL2Q8N4E4 241 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 HELBQ8NG08 1087 aaPredicted RBP18.99■□□□□ 0.63
HOXD3-201ENST00000249440 SENP2Q9HC62 589 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 SLC12A7Q9Y666 1083 aa18.99■□□□□ 0.63
HOXD3-201ENST00000249440 SPATA31A6Q5VVP1 1343 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 DOCK2Q92608 1830 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 BIN1O00499 593 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 DHX8Q14562 1220 aaKnown RBP18.98■□□□□ 0.63
HOXD3-201ENST00000249440 PTPN14Q15678 1187 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 MAGEB6Q8N7X4 407 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 LRP5O75197 1615 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 DISP2A7MBM2 1401 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 MROH7-TTC4A0A0A0MT08 1334 aa18.98■□□□□ 0.63
HOXD3-201ENST00000249440 MEX3CQ5U5Q3 659 aaKnown RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms