RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 RUFY3Q7L099 469 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 PODNQ7Z5L7 613 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 RTKN2Q8IZC4 609 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 LARGE2Q8N3Y3 721 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 TTF2Q9UNY4 1162 aaKnown RBP15.37■□□□□ 0.05
HIF3A-201ENST00000244302 RPAP1Q9BWH6 1393 aaPredicted RBP15.37■□□□□ 0.05
HIF3A-201ENST00000244302 CYP2D6P10635 497 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 TSGA10IPQ3SY00 556 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 SPTY2D1Q68D10 685 aaPredicted RBP15.37■□□□□ 0.05
HIF3A-201ENST00000244302 CC2D2BQ6DHV5 1058 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 IL27Q8NEV9 243 aa15.37■□□□□ 0.05
HIF3A-201ENST00000244302 ZBTB12Q9Y330 459 aaPredicted RBP15.37■□□□□ 0.05
HIF3A-201ENST00000244302 MINDY4BA8MYZ0 360 aa15.36■□□□□ 0.05
HIF3A-201ENST00000244302 K7ELQ4 463 aaPredicted RBP15.36■□□□□ 0.05
HIF3A-201ENST00000244302 ZNF213O14771 459 aa15.36■□□□□ 0.05
HIF3A-201ENST00000244302 RNF20Q5VTR2 975 aa15.36■□□□□ 0.05
HIF3A-201ENST00000244302 NEK1Q96PY6 1258 aa15.36■□□□□ 0.05
HIF3A-201ENST00000244302 NAPBQ9H115 298 aa15.36■□□□□ 0.05
HIF3A-201ENST00000244302 PDRG1Q9NUG6 133 aa15.36■□□□□ 0.05
HIF3A-201ENST00000244302 ZBTB22O15209 634 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 BTDP43251 543 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 TDO2P48775 406 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 ZGPATQ8N5A5 531 aaKnown RBP15.35■□□□□ 0.05
HIF3A-201ENST00000244302 PSMD1Q99460 953 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 ST18O60284 1047 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 TGFBRAP1Q8WUH2 860 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 TMX3Q96JJ7 454 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 DAGLAQ9Y4D2 1042 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 CYP46A1Q9Y6A2 500 aa15.35■□□□□ 0.05
HIF3A-201ENST00000244302 USP17L8P0C7I0 530 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 SLURP2P0DP57 97 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 RPS6KB1P23443 525 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 TOB2Q14106 344 aaPredicted RBP15.34■□□□□ 0.05
HIF3A-201ENST00000244302 IMMTQ16891 758 aaKnown RBP15.34■□□□□ 0.05
HIF3A-201ENST00000244302 BLOC1S2Q6QNY1 142 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 TM6SF1Q9BZW5 370 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 DCP1AQ9NPI6 582 aaPredicted RBP15.34■□□□□ 0.05
HIF3A-201ENST00000244302 MROH7-TTC4A0A0A0MT08 1334 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 USP17L3A6NCW0 530 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 USP17L4A6NCW7 530 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 USP17L12C9JPN9 530 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 USP17L21D6R901 530 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 PSMD14O00487 310 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 CTR9Q6PD62 1173 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 USP17L1Q7RTZ2 530 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 MAPKAPK5Q8IW41 473 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 TBC1D22AQ8WUA7 517 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 CTNNA3Q9UI47 895 aa15.34■□□□□ 0.05
HIF3A-201ENST00000244302 NEDD4P46934 1319 aa15.33■□□□□ 0.05
HIF3A-201ENST00000244302 GPR75-ASB3A0A0A6YYF3 556 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 SHTN1A0MZ66 631 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 PRDM1O75626 825 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 IARSP41252 1262 aaKnown RBP15.33■□□□□ 0.04
HIF3A-201ENST00000244302 CACNB3P54284 484 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 RHBDL3P58872 404 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 ALX1Q15699 326 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 STRIP1Q5VSL9 837 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 SAP30BPQ9UHR5 308 aaKnown RBP15.33■□□□□ 0.04
HIF3A-201ENST00000244302 TPCN1Q9ULQ1 816 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 MYH2Q9UKX2 1941 aa15.33■□□□□ 0.04
HIF3A-201ENST00000244302 BRCA1P38398 1863 aaKnown RBP15.32■□□□□ 0.04
HIF3A-201ENST00000244302 ANTXR2P58335 489 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 Q6ZUG5 572 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 CYB5R4Q7L1T6 521 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 NECAB1Q8N987 351 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 SUPT20HQ8NEM7 779 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 SYT17Q9BSW7 474 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 TAOK3Q9H2K8 898 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 SENP2Q9HC62 589 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 BAZ2AQ9UIF9 1905 aaKnown RBP15.32■□□□□ 0.04
HIF3A-201ENST00000244302 ADAMTSL1Q8N6G6 1762 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 B4E1Z4 1266 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 EXOSC10Q01780 885 aaKnown RBP15.32■□□□□ 0.04
HIF3A-201ENST00000244302 ST3GAL1Q11201 340 aa15.32■□□□□ 0.04
HIF3A-201ENST00000244302 MKRN1Q9UHC7 482 aaKnown RBP15.32■□□□□ 0.04
HIF3A-201ENST00000244302 GNAT2P19087 354 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 ME3Q16798 604 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 RRP12Q5JTH9 1297 aaKnown RBP15.31■□□□□ 0.04
HIF3A-201ENST00000244302 APOBEC3HQ6NTF7 200 aaKnown RBP15.31■□□□□ 0.04
HIF3A-201ENST00000244302 RAB11FIP4Q86YS3 637 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 CCDC88AQ3V6T2 1871 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 PSMA5P28066 241 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 PPP4CP60510 307 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 CXCL9Q07325 125 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 PPARAQ07869 468 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 STK3Q13188 491 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 DYNLL2Q96FJ2 89 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 CRNKL1Q9BZJ0 848 aaKnown RBP15.31■□□□□ 0.04
HIF3A-201ENST00000244302 DDX4Q9NQI0 724 aaKnown RBP15.31■□□□□ 0.04
HIF3A-201ENST00000244302 MCM9Q9NXL9 1143 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 GAKO14976 1311 aa15.31■□□□□ 0.04
HIF3A-201ENST00000244302 PPFIA3O75145 1194 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 USP5P45974 858 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 CRKP46108 304 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 PLCD1P51178 756 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 GSTO1P78417 241 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 NFIAQ12857 509 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 PICALMQ13492 652 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 DHX32Q7L7V1 743 aaKnown RBP15.3■□□□□ 0.04
HIF3A-201ENST00000244302 ZFPM1Q8IX07 1006 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms