RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PPP1R12BO60237 982 aaPredicted RBP16.69■□□□□ 0.26
PTPRA-201ENST00000216877 MYL5Q02045 173 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 FMNL3Q8IVF7 1028 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 NCKAP5LQ9HCH0 1330 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 A0A1B0GUA9 196 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 EPB41L2O43491 1005 aaKnown RBP16.69■□□□□ 0.26
PTPRA-201ENST00000216877 CHST3Q7LGC8 479 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 SLC35F6Q8N357 371 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 KCND1Q9NSA2 647 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 RPS6KA5O75582 802 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 NLRP12P59046 1061 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 TEFQ10587 303 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 SF3A3Q12874 501 aaKnown RBP eCLIP16.69■□□□□ 0.269e-7■■■□□ 18.6
PTPRA-201ENST00000216877 RCOR1Q9UKL0 485 aa16.69■□□□□ 0.26
PTPRA-201ENST00000216877 SOS1Q07889 1333 aaPredicted RBP16.69■□□□□ 0.26
PTPRA-201ENST00000216877 CHUKO15111 745 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 CPP00450 1065 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 IRAK1P51617 712 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 MRPS25P82663 173 aaKnown RBP16.68■□□□□ 0.26
PTPRA-201ENST00000216877 TRMT44Q8IYL2 757 aaKnown RBP16.68■□□□□ 0.26
PTPRA-201ENST00000216877 CCDC114Q96M63 670 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 TM6SF1Q9BZW5 370 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 HOOK1Q9UJC3 728 aaKnown RBP16.68■□□□□ 0.26
PTPRA-201ENST00000216877 KIF24Q5T7B8 1368 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 ARHGAP23Q9P227 1491 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 PES1O00541 588 aaKnown RBP16.68■□□□□ 0.26
PTPRA-201ENST00000216877 AP1ARQ63HQ0 302 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 KLHL10Q6JEL2 608 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 EZRP15311 586 aaKnown RBP16.68■□□□□ 0.26
PTPRA-201ENST00000216877 PLCD4Q9BRC7 762 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 RBM28Q9NW13 759 aaKnown RBP16.68■□□□□ 0.26
PTPRA-201ENST00000216877 IRAK4Q9NWZ3 460 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 SALL3Q9BXA9 1300 aa16.68■□□□□ 0.26
PTPRA-201ENST00000216877 MATR3P43243 847 aaKnown RBP eCLIP16.67■□□□□ 0.263e-7■■■■□ 23.1
PTPRA-201ENST00000216877 PTPDC1A2A3K4 754 aa16.67■□□□□ 0.26
PTPRA-201ENST00000216877 KCTD16Q68DU8 428 aa16.67■□□□□ 0.26
PTPRA-201ENST00000216877 PA2G4Q9UQ80 394 aaKnown RBP16.67■□□□□ 0.26
PTPRA-201ENST00000216877 ENC1O14682 589 aa16.67■□□□□ 0.26
PTPRA-201ENST00000216877 PDCLQ13371 301 aa16.67■□□□□ 0.26
PTPRA-201ENST00000216877 TOB2Q14106 344 aaPredicted RBP16.67■□□□□ 0.26
PTPRA-201ENST00000216877 NECTIN1Q15223 517 aa16.67■□□□□ 0.26
PTPRA-201ENST00000216877 ANKRD18AQ8IVF6 992 aa16.67■□□□□ 0.26
PTPRA-201ENST00000216877 CSB-PGBD3P0DP91 1061 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 SSR1P43307 286 aaKnown RBP16.66■□□□□ 0.26
PTPRA-201ENST00000216877 NME9Q86XW9 330 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 VSTM4Q8IW00 320 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 NEK1Q96PY6 1258 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 GOLGA6BA6NDN3 693 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 PNOCQ13519 176 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 TEX11Q8IYF3 940 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 C14orf93Q9H972 538 aaKnown RBP16.66■□□□□ 0.26
PTPRA-201ENST00000216877 ECHDC1Q9NTX5 307 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 RIMS2Q9UQ26 1411 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 ENO4A6NNW6 628 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 ZKSCAN4Q969J2 545 aaPredicted RBP16.66■□□□□ 0.26
PTPRA-201ENST00000216877 GUCA1BQ9UMX6 200 aa16.66■□□□□ 0.26
PTPRA-201ENST00000216877 FOXO3O43524 673 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 GPTP24298 496 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 KCNJ6P48051 423 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 TRDNQ13061 729 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 CEP120Q8N960 986 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 TBC1D31Q96DN5 1066 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 CLIC4Q9Y696 253 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 A1BGP04217 495 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 NLRP6P59044 892 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 IFT88Q13099 833 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 SPTLC2O15270 562 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 SYKP43405 635 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 KIFC2Q96AC6 838 aa16.65■□□□□ 0.26
PTPRA-201ENST00000216877 NBPF7P0C2Y1 421 aaPredicted RBP16.64■□□□□ 0.25
PTPRA-201ENST00000216877 PIP4K2BP78356 416 aa16.64■□□□□ 0.25
PTPRA-201ENST00000216877 FMR1NBQ8N0W7 255 aaPredicted RBP16.64■□□□□ 0.25
PTPRA-201ENST00000216877 HNRNPLLQ8WVV9 542 aaKnown RBP16.64■□□□□ 0.25
PTPRA-201ENST00000216877 EDC3Q96F86 508 aaKnown RBP16.64■□□□□ 0.25
PTPRA-201ENST00000216877 NAPGQ99747 312 aaPredicted RBP16.64■□□□□ 0.25
PTPRA-201ENST00000216877 STX10O60499 249 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 ZNF827Q17R98 1081 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 SND1Q7KZF4 910 aaKnown RBP eCLIP16.63■□□□□ 0.25
PTPRA-201ENST00000216877 ENGASEQ8NFI3 743 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 A0A0D9SFI3 127 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 GOLGA6L7A0A1B0GV03 622 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 GCFC2P16383 781 aaKnown RBP16.63■□□□□ 0.25
PTPRA-201ENST00000216877 ACRBPQ8NEB7 543 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 KLC4Q9NSK0 619 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 CHD2O14647 1828 aaKnown RBP16.63■□□□□ 0.25
PTPRA-201ENST00000216877 EIF4E1BA6NMX2 242 aaKnown RBP16.63■□□□□ 0.25
PTPRA-201ENST00000216877 NAP1L1P55209 391 aaKnown RBP16.63■□□□□ 0.25
PTPRA-201ENST00000216877 USP44Q9H0E7 712 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 NDUFB9Q9Y6M9 179 aa16.63■□□□□ 0.25
PTPRA-201ENST00000216877 RGPD8O14715 1765 aaPredicted RBP16.63■□□□□ 0.25
PTPRA-201ENST00000216877 CHL1O00533 1208 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 NCAPHQ15003 741 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 ARMC3Q5W041 872 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 SPECC1LQ69YQ0 1117 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 B4GALNT4Q76KP1 1039 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 KIF9Q9HAQ2 790 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 KIF4AO95239 1232 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 STX17P56962 302 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 SPECC1Q5M775 1068 aa16.62■□□□□ 0.25
PTPRA-201ENST00000216877 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms