RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 ZNF827Q17R98 1081 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 CCDC82Q8N4S0 544 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 CCDC191Q8NCU4 936 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 INTS13Q9NVM9 706 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 TUBE1Q9UJT0 475 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 UBXN4Q92575 508 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 IKBKBO14920 756 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 CIAO1O76071 339 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 TOP1P11387 765 aaKnown RBP16.18■□□□□ 0.18
USH1C-201ENST00000005226 MCAMP43121 646 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 PLA2G4AP47712 749 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 BMS1Q14692 1282 aaKnown RBP16.18■□□□□ 0.18
USH1C-201ENST00000005226 SLC9C2Q5TAH2 1124 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 GRAMD1CQ8IYS0 662 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 HPSEQ9Y251 543 aa16.18■□□□□ 0.18
USH1C-201ENST00000005226 POLR3GO15318 223 aaPredicted RBP16.17■□□□□ 0.18
USH1C-201ENST00000005226 NRDCO43847 1150 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 IDH1O75874 414 aaKnown RBP16.17■□□□□ 0.18
USH1C-201ENST00000005226 PNMA6AP0CW24 399 aaPredicted RBP16.17■□□□□ 0.18
USH1C-201ENST00000005226 ADKP55263 362 aaKnown RBP16.17■□□□□ 0.18
USH1C-201ENST00000005226 TRMT44Q8IYL2 757 aaKnown RBP16.17■□□□□ 0.18
USH1C-201ENST00000005226 CHMP4CQ96CF2 233 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 MAP3K14Q99558 947 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 CAMTA1Q9Y6Y1 1673 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 RANBP6O60518 1105 aaKnown RBP16.17■□□□□ 0.18
USH1C-201ENST00000005226 ATP2B1P20020 1258 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 TRDNQ13061 729 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 NFXL1Q6ZNB6 911 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 VSTM4Q8IW00 320 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 CNNM3Q8NE01 707 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 MNS1Q8NEH6 495 aa16.17■□□□□ 0.18
USH1C-201ENST00000005226 ANGEL1Q9UNK9 670 aaKnown RBP16.17■□□□□ 0.18
USH1C-201ENST00000005226 CMTR1Q8N1G2 835 aaKnown RBP16.16■□□□□ 0.18
USH1C-201ENST00000005226 WDR24Q96S15 920 aa16.16■□□□□ 0.18
USH1C-201ENST00000005226 PIH1D3Q9NQM4 214 aaKnown RBP16.16■□□□□ 0.18
USH1C-201ENST00000005226 KCNH3Q9ULD8 1083 aa16.16■□□□□ 0.18
USH1C-201ENST00000005226 ZFYP08048 801 aaPredicted RBP16.16■□□□□ 0.18
USH1C-201ENST00000005226 GUCY1A2P33402 732 aa16.16■□□□□ 0.18
USH1C-201ENST00000005226 APOA5Q6Q788 366 aa16.16■□□□□ 0.18
USH1C-201ENST00000005226 NOL10Q9BSC4 688 aaKnown RBP16.16■□□□□ 0.18
USH1C-201ENST00000005226 ZMYM6O95789 1325 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 VWA3AA6NCI4 1184 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 GPTP24298 496 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 METTL24Q5JXM2 366 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 OLFM4Q6UX06 510 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 DESI2Q9BSY9 194 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 SLC26A6Q9BXS9 759 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 ZCCHC17Q9NP64 241 aaKnown RBP16.15■□□□□ 0.18
USH1C-201ENST00000005226 KCNJ14Q9UNX9 436 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 SH2B2O14492 632 aaPredicted RBP16.15■□□□□ 0.18
USH1C-201ENST00000005226 PRR29P0C7W0 189 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 FMR1Q06787 632 aaKnown RBP eCLIP16.15■□□□□ 0.18
USH1C-201ENST00000005226 RESP18Q5W5W9 173 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 TOGARAM2Q6ZUX3 1019 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.15■□□□□ 0.18
USH1C-201ENST00000005226 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.15■□□□□ 0.18
USH1C-201ENST00000005226 FAM217BQ9NTX9 383 aaPredicted RBP16.15■□□□□ 0.18
USH1C-201ENST00000005226 AKAP2Q9Y2D5 859 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 PPP2R2CQ9Y2T4 447 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 PARP3Q9Y6F1 533 aa16.15■□□□□ 0.18
USH1C-201ENST00000005226 BTBD18B2RXH4 712 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 IARSP41252 1262 aaKnown RBP16.14■□□□□ 0.17
USH1C-201ENST00000005226 GNG11P61952 73 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 CTDSPL2Q05D32 466 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 CCDC102BQ68D86 513 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 KRBA2Q6ZNG9 492 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 TMEM139Q8IV31 216 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 TIGD1Q96MW7 591 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 TRERF1Q96PN7 1200 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 C1orf167Q5SNV9 1468 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 IFIT5Q13325 482 aaKnown RBP16.14■□□□□ 0.17
USH1C-201ENST00000005226 LRRFIP1Q32MZ4 808 aaKnown RBP16.14■□□□□ 0.17
USH1C-201ENST00000005226 HELBQ8NG08 1087 aaPredicted RBP16.14■□□□□ 0.17
USH1C-201ENST00000005226 ZKSCAN3Q9BRR0 538 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 CPDO75976 1380 aa16.14■□□□□ 0.17
USH1C-201ENST00000005226 TADA3O75528 432 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 KARSQ15046 597 aaKnown RBP16.13■□□□□ 0.17
USH1C-201ENST00000005226 TMCO3Q6UWJ1 677 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 IRX2Q9BZI1 471 aaPredicted RBP16.13■□□□□ 0.17
USH1C-201ENST00000005226 WWC3Q9ULE0 1092 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 TACC3Q9Y6A5 838 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 PHLPP2Q6ZVD8 1323 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 GOLGA8AA7E2F4 631 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 SNAP23O00161 211 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 ZBTB43O43298 467 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 CBFA2T2O43439 604 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 PPP6R2O75170 966 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 CDK11BP21127 795 aaKnown RBP16.13■□□□□ 0.17
USH1C-201ENST00000005226 ADD2P35612 726 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 KCNJ6P48051 423 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 MTF1Q14872 753 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 NTRK3Q16288 839 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 LDHAL6AQ6ZMR3 332 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 ZSWIM4Q9H7M6 989 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 SEC31BQ9NQW1 1179 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 UBN2Q6ZU65 1347 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 ZNF532Q9HCE3 1301 aa16.13■□□□□ 0.17
USH1C-201ENST00000005226 TCIRG1Q13488 830 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 TMEM67Q5HYA8 995 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 USP49Q70CQ1 688 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms