RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 IFI27L1Q96BM0 104 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 LINC00479Q96M42 142 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 KLRF1Q9NZS2 232 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 TRBV25-1A0A075B6N4 114 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 LTAP01374 205 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 RBP4P02753 201 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 DSCR4P56555 118 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-213ENST00000636759 OR10J6PQ8NGY7 276 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 RASL11BQ9BPW5 248 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 NABP2Q9BQ15 211 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 OBP2BQ9NPH6 170 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 SMG1Q96Q15 3661 aaKnown RBP5.55□□□□□ -1.52
SCN1A-213ENST00000636759 ASIPP42127 132 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 EMP1P54849 157 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 C16orf47Q6ZP98 133 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-213ENST00000636759 OR9G1Q8NH87 305 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 FAM234AQ9H0X4 552 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 IGHV5-10-1A0A0J9YXX1 117 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 LOC389332A0A1B0GUA5 103 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 PEX7O00628 323 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 MPV17P39210 176 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 SRSF1Q07955 248 aaKnown RBP eCLIP5.54□□□□□ -1.52
SCN1A-213ENST00000636759 C20orf204Q6ZNR8 217 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 FAM214BQ7L5A3 538 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 C3orf56Q8N813 242 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 NABP1Q96AH0 204 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 SLC25A33Q9BSK2 321 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 TMEM133Q9H2Q1 129 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 PRRG2O14669 202 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 WIPF1O43516 503 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 C8orf88P0DMB2 117 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 MEOX1P50221 254 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 HES1Q14469 280 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 TAL2Q16559 108 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 OR1L8Q8NGR8 309 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 SGK494Q96LW2 274 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 TTTY13Q9BZ97 58 aa5.54□□□□□ -1.52
SCN1A-213ENST00000636759 NPIPB11E5RHQ5 1161 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-213ENST00000636759 HOXA3O43365 443 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-213ENST00000636759 HBDP02042 147 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 ACP1P24666 158 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 ERVK-16P61578 105 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 GUSBP11Q6P575 273 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 RPEQ96AT9 228 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 ASXL3Q9C0F0 2248 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 PTPRBP23467 1997 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 FRYQ5TBA9 3013 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 TRBV6-6A0A0A6YYG2 114 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 C17orf98A8MV24 154 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 MOSP00540 346 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 IGLV2-14P01704 120 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 SUMO3P55854 103 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-213ENST00000636759 RIGQ13278 110 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 KLF17Q5JT82 389 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-213ENST00000636759 ABHD12Q8N2K0 398 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 SEC16AO15027 2179 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 TRAV4A0A0B4J268 109 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 PRSS1P07477 247 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 FAM106CPP0CH98 169 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 SCGB1C2P0DMR2 95 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 FAM106AQ4KMX7 169 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 TMEM78Q5T7P6 136 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 Q6Q795 121 aa5.53□□□□□ -1.52
SCN1A-213ENST00000636759 DYSFO75923 2080 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 J3KT08 172 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 TBC1D28Q2M2D7 210 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 MRPL14Q6P1L8 145 aaKnown RBP5.52□□□□□ -1.53
SCN1A-213ENST00000636759 SFTA2Q6UW10 78 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 CIARTQ8N365 385 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-213ENST00000636759 C1orf162Q8NEQ5 155 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-213ENST00000636759 CFAP47Q6ZTR5 3102 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF407Q9C0G0 2248 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 TRAV8-1A0A0A6YYK1 113 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 NTN3O00634 580 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-213ENST00000636759 CFIP05156 583 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 COL8A1P27658 744 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 IFI27P40305 119 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-213ENST00000636759 PRR30Q53SZ7 412 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-213ENST00000636759 CT83Q5H943 113 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 C6orf15Q6UXA7 325 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-213ENST00000636759 LINC00596Q86U02 117 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 HS3ST6Q96QI5 342 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 PIMREGQ9BSJ6 248 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 DKK2Q9UBU2 259 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 KNTC1P50748 2209 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 MED12Q93074 2177 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 P0C879 139 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 MYOD1P15172 320 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 AJUBAQ96IF1 538 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 CARD19Q96LW7 228 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 PROK2Q9HC23 129 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 DLL3Q9NYJ7 618 aa5.52□□□□□ -1.53
SCN1A-213ENST00000636759 A0A1B0GUT8 65 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 CRYGSP22914 178 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 SMCPP49901 116 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-213ENST00000636759 MRPL23Q16540 153 aaKnown RBP5.51□□□□□ -1.53
SCN1A-213ENST00000636759 C10orf128Q5T292 105 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 GTSCR1Q86UQ5 136 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 WFDC3Q8IUB2 231 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms