RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 KHDC1LQ5JSQ8 128 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 FAM122CQ6P4D5 195 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 PQLC2Q6ZP29 291 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 RPP25LQ8N5L8 163 aaKnown RBP4.98□□□□□ -1.61
SPG11-221ENST00000560299 STXBP6Q8NFX7 210 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 MBD3L1Q8WWY6 194 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 RAB24Q969Q5 203 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 RNF125Q96EQ8 232 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 RCC1LQ96I51 464 aaKnown RBP4.98□□□□□ -1.61
SPG11-221ENST00000560299 CCDC140Q96MF4 163 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 MDFIQ99750 246 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 ZNF747Q9BV97 191 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 PBDC1Q9BVG4 233 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 HRH4Q9H3N8 390 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 VSIRQ9H7M9 311 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 TECRQ9NZ01 308 aaKnown RBP4.98□□□□□ -1.61
SPG11-221ENST00000560299 RABAC1Q9UI14 185 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 FUT9Q9Y231 359 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 PUS1Q9Y606 427 aaKnown RBP eCLIP4.98□□□□□ -1.61
SPG11-221ENST00000560299 RFNGQ9Y644 331 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 NBEAL1Q6ZS30 2694 aa4.98□□□□□ -1.61
SPG11-221ENST00000560299 WI2-2373I1.2A0A1W2PRP0 233 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 MAP1LC3B2A6NCE7 125 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 F8W735 103 aaPredicted RBP4.97□□□□□ -1.61
SPG11-221ENST00000560299 IFNA1P01562 189 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 HSPB1P04792 205 aaKnown RBP4.97□□□□□ -1.61
SPG11-221ENST00000560299 C8orf88P0DMB2 117 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 NPPCP23582 126 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 BMI1P35226 326 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 TAGLN2P37802 199 aaKnown RBP4.97□□□□□ -1.61
SPG11-221ENST00000560299 PSMB3P49720 205 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 FHITP49789 147 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 SHISA2Q6UWI4 295 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 LCN15Q6UWW0 184 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 IL34Q6ZMJ4 242 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 LCNL1Q6ZST4 164 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 LINC00305Q7Z4B0 112 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 MYOZ3Q8TDC0 251 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 C4orf3Q8WVX3 66 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 DPF1Q92782 380 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 MARC2Q969Z3 335 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 METTL26Q96S19 204 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 CHRDL1Q9BU40 450 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 MAP1LC3BQ9GZQ8 125 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 SLC25A22Q9H936 323 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 TMEM167BQ9NRX6 74 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 MED9Q9NWA0 146 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 MRPL27Q9P0M9 148 aaKnown RBP4.97□□□□□ -1.61
SPG11-221ENST00000560299 DOK5Q9P104 306 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 TSSC4Q9Y5U2 329 aaPredicted RBP4.97□□□□□ -1.61
SPG11-221ENST00000560299 FBN3Q75N90 2809 aa4.97□□□□□ -1.61
SPG11-221ENST00000560299 IGHV3-35A0A0C4DH35 117 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 A0A1W2PS18 150 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 ZNF320A2RRD8 509 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 RAB19A4D1S5 217 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 LINC00862A6NCI5 91 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 PPP5D1E7EU14 171 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 OR7C2O60412 319 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 STAG3L2P0CL84 134 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 STAG3L3P0CL85 134 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 ADMP35318 185 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 PROK1P58294 105 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 KIAA0141Q14154 515 aaPredicted RBP4.96□□□□□ -1.62
SPG11-221ENST00000560299 AWAT1Q58HT5 328 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 GCSAMLQ5JQS6 135 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 C10orf99Q6UWK7 81 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 TOMM20LQ6UXN7 152 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 BPIFA4PQ86YQ2 179 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 GPHB5Q86YW7 130 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 IQCF2Q8IXL9 164 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.96□□□□□ -1.62
SPG11-221ENST00000560299 LYPD6BQ8NI32 183 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 WIPF2Q8TF74 440 aaPredicted RBP4.96□□□□□ -1.62
SPG11-221ENST00000560299 PCNPQ8WW12 178 aaKnown RBP4.96□□□□□ -1.62
SPG11-221ENST00000560299 TMEM37Q8WXS4 190 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 GRAMD2BQ96HH9 432 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 GPR82Q96P67 336 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 OR5B12Q96R08 314 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 C20orf24Q9BUV8 137 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 KRTAP9-9Q9BYP9 154 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 KRTAP9-4Q9BYQ2 154 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 SLC25A39Q9BZJ4 359 aaPredicted RBP4.96□□□□□ -1.62
SPG11-221ENST00000560299 TMEM231Q9H6L2 316 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 SEPSECSQ9HD40 501 aaKnown RBP4.96□□□□□ -1.62
SPG11-221ENST00000560299 MANBALQ9NQG1 85 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 PGPEP1Q9NXJ5 209 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 UFC1Q9Y3C8 167 aa4.96□□□□□ -1.62
SPG11-221ENST00000560299 VWFP04275 2813 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 A0A1B0GV50 99 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 ZNF98A6NK75 572 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 LINC01619G3V211 115 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 I3L521 148 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 K7EMT4 169 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 HMGB3O15347 200 aaKnown RBP4.95□□□□□ -1.62
SPG11-221ENST00000560299 ARL14EPLP0DKL9 152 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 RPL7P18124 248 aaKnown RBP4.95□□□□□ -1.62
SPG11-221ENST00000560299 FGF8P55075 233 aaPredicted RBP4.95□□□□□ -1.62
SPG11-221ENST00000560299 PMS2P11Q13670 270 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 PEA15Q15121 130 aa4.95□□□□□ -1.62
SPG11-221ENST00000560299 ZNF726P1Q15940 193 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms