RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 NUPL2O15504 423 aaKnown RBP9.61□□□□□ -0.87
SHMT2-230ENST00000557427 NDUFA3O95167 84 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 IGHG4P01861 327 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 CDX1P47902 265 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-230ENST00000557427 PSMB3P49720 205 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 PRSS8Q16651 343 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 ECSCRQ19T08 205 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 PVRIGQ6DKI7 326 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 OR10W1Q8NGF6 305 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 OR5B12Q96R08 314 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 METTL1Q9UBP6 276 aaKnown RBP9.61□□□□□ -0.87
SHMT2-230ENST00000557427 SORL1Q92673 2214 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 A0A1W2PPV4 95 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 C7orf77A4D0Y5 90 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 E7EUB6 86 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 PPIFP30405 207 aaKnown RBP9.6□□□□□ -0.87
SHMT2-230ENST00000557427 PRR20EP86478 221 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 PRR20CP86479 221 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 PRR20DP86480 221 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 PRR20BP86481 221 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 PRR20AP86496 221 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 MIC13Q5XKP0 118 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 TMEM88Q6PEY1 159 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 PPP1R27Q86WC6 154 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 CYB561D1Q8N8Q1 229 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 ZNF114Q8NC26 417 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 SLC35E1Q96K37 410 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 FAM103A1Q9BTL3 118 aaKnown RBP9.6□□□□□ -0.87
SHMT2-230ENST00000557427 TUBA4BQ9H853 241 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 SMCO4Q9NRQ5 59 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 TPSG1Q9NRR2 321 aa9.6□□□□□ -0.87
SHMT2-230ENST00000557427 H3BQ15 152 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 M0R036 132 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 EGR2P11161 476 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-230ENST00000557427 PSMB8P28062 276 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 RPL27AP46776 148 aaKnown RBP9.59□□□□□ -0.87
SHMT2-230ENST00000557427 RAB9AP51151 201 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 B2MP61769 119 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 GNB1P62873 340 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 NDPQ00604 133 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 MEF2BQ02080 365 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-230ENST00000557427 WT1-ASQ06250 92 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 GAMTQ14353 236 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 C10orf55Q5SWW7 151 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 FAM90A2PQ658T7 463 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 SLC16A13Q7RTY0 426 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 CBLN2Q8IUK8 224 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 STPG3Q8N7X2 389 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 ZNF491Q8N8L2 437 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 RNF152Q8N8N0 203 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 MS4A10Q96PG2 267 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 SRSF8Q9BRL6 282 aaKnown RBP9.59□□□□□ -0.87
SHMT2-230ENST00000557427 RPS10P5Q9NQ39 176 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 SLC45A2Q9UMX9 530 aa9.59□□□□□ -0.87
SHMT2-230ENST00000557427 KMT2AQ03164 3969 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 IGLC7A0M8Q6 106 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 TMEM250H0YL14 139 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 ACTL6BO94805 426 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 CNIH1O95406 144 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 IGLV1-40P01703 118 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 LINC00869P0C866 280 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 STAG3L2P0CL84 134 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 STAG3L3P0CL85 134 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 RHOBP62745 196 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 KIAA0141Q14154 515 aaPredicted RBP9.58□□□□□ -0.88
SHMT2-230ENST00000557427 TNXAQ16473 311 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 UNQ5815/PRO19632Q6UWF5 114 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 ZNF562Q6V9R5 426 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 C15orf54Q8N8G6 183 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 OR11H1Q8NG94 326 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 TVP23CQ96ET8 276 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 NIPSNAP3BQ9BS92 247 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 GNB4Q9HAV0 340 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 ZNF580Q9UK33 172 aa9.58□□□□□ -0.88
SHMT2-230ENST00000557427 PUS1Q9Y606 427 aaKnown RBP eCLIP9.58□□□□□ -0.88
SHMT2-230ENST00000557427 A0A087WWC5 75 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 HMGB3O15347 200 aaKnown RBP9.57□□□□□ -0.88
SHMT2-230ENST00000557427 CXorf1O96002 111 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 CD81P60033 236 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 PNRC1Q12796 327 aaPredicted RBP9.57□□□□□ -0.88
SHMT2-230ENST00000557427 FXYD3Q14802 87 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 GCSAMLQ5JQS6 135 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 ETFRF1Q6IPR1 90 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 OR1N2Q8NGR9 330 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 C4orf3Q8WVX3 66 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 UBE2E2Q96LR5 201 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 TXNDC17Q9BRA2 123 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 TMPRSS5Q9H3S3 457 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 ZNF355PQ9NSJ1 428 aa9.57□□□□□ -0.88
SHMT2-230ENST00000557427 LOC105371267A0A1B0GV96 52 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 B4DEV8 164 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 CORTO00230 105 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 EIF3GO75821 320 aaKnown RBP eCLIP9.56□□□□□ -0.88
SHMT2-230ENST00000557427 MT-CO2P00403 227 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 CRYGCP07315 174 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 ATF4P18848 351 aaPredicted RBP9.56□□□□□ -0.88
SHMT2-230ENST00000557427 OR10J1P30954 320 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 CEBPGP53567 150 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 THAP8Q8NA92 274 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 OR5T1Q8NG75 326 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms