RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	IFNA10	P01566	189 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	NPPC	P23582	126 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	NKX2-1	P43699	371 aa	Predicted RBP	4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	INPP1	P49441	399 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	DEFB1	P60022	68 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	POLR2G	P62487	172 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	ZNF90	Q03938	601 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	RNF151	Q2KHN1	245 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	OR8G2P	Q6IF36	304 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	TMEM144	Q7Z5S9	345 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	NRARP	Q7Z6K4	114 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	KIR2DL5A	Q8N109	375 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	KIR2DL5B	Q8NHK3	375 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	GRAMD2B	Q96HH9	432 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	RCHY1	Q96PM5	261 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	RAB40C	Q96S21	281 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	GGACT	Q9BVM4	153 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	MAGT1	Q9H0U3	335 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	SLC45A2	Q9UMX9	530 aa		4.21	□□□□□ -1.74
CUX1-208	ENST00000485792	TRAV6	A0A075B6T7	132 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	IGHV3-66	A0A0C4DH42	116 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	OR4C46	A6NHA9	309 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792		A8MTW9	85 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	KRTAP9-7	A8MTY7	169 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792		H3BP45	60 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	WRB	O00258	174 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	SOCS3	O14543	225 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	DEDD	O75618	318 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	CFD	P00746	253 aa	Predicted RBP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	IFNA21	P01568	189 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	HNRNPC	P07910	306 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	GIG44	P09565	113 aa	Predicted RBP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	RD3L	P0DJH9	198 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	PRB4	P10163	310 aa	Predicted RBP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	IAPP	P10997	89 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	CMC4	P56277	68 aa	Predicted RBP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	RAB11A	P62491	216 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	IAH1	Q2TAA2	248 aa	Predicted RBP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	VWC2	Q2TAL6	325 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	C1orf194	Q5T5A4	169 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	MZT2B	Q6NZ67	158 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792		Q6ZWC4	215 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	TCF24	Q7RTU0	167 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	C12orf45	Q8N5I9	185 aa	Predicted RBP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	OR51G1	Q8NGK1	321 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792		Q8WTZ3	238 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	RNF125	Q96EQ8	232 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	C2orf50	Q96LR7	162 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	OVOL2	Q9BRP0	275 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	C20orf24	Q9BUV8	137 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	KRTAP4-7	Q9BYR0	210 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	MS4A6A	Q9H2W1	248 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	SRD5A3	Q9H8P0	318 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	MAP6D1	Q9H9H5	199 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	TP53TG1	Q9Y2A0	90 aa		4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	STRAP	Q9Y3F4	350 aa	Known RBP	4.2	□□□□□ -1.74
CUX1-208	ENST00000485792	UBE2C	O00762	179 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	MRPS12	O15235	138 aa	Known RBP	4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	PRAF2	O60831	178 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	YIF1A	O95070	293 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	IFNA4	P05014	189 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	IL4	P05112	153 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	BMI1	P35226	326 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	P2RY1	P47900	373 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	EIF2B2	P49770	351 aa	Known RBP	4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	AP2S1	P53680	142 aa	Predicted RBP	4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	RPP30	P78346	268 aa	Known RBP	4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	DLK1	P80370	383 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	GUCA2B	Q16661	112 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	TOR2A	Q5JU69	321 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	SPANXN5	Q5MJ07	72 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	CSNK1G2-AS1	Q8NCQ2	148 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	ACY3	Q96HD9	319 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	METTL26	Q96S19	204 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	TMEM231	Q9H6L2	316 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	NPVF	Q9HCQ7	196 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	PSENEN	Q9NZ42	101 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	UBQLN2	Q9UHD9	624 aa		4.19	□□□□□ -1.74
CUX1-208	ENST00000485792	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	HELT	A6NFD8	242 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	INMT-MINDY4	F8WBC2	141 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792		H0YIZ8	118 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	C3orf84	H3BNL1	204 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	SCGB2A1	O75556	95 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	LINC00869	P0C866	280 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	C4BPB	P20851	252 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	GATA2	P23769	480 aa	Predicted RBP	4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	H2BFS	P57053	126 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	SELENOT	P62341	195 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	MORN5	Q5VZ52	161 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	PATE2	Q6UY27	113 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	ACOT7L	Q6ZUV0	252 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	TRPT1	Q86TN4	253 aa	Known RBP	4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	RNF183	Q96D59	192 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	SLC35E1	Q96K37	410 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	RNF126	Q9BV68	326 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	GGTLC1	Q9BX51	225 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	NMES1	Q9C002	83 aa		4.18	□□□□□ -1.74
CUX1-208	ENST00000485792	TUBA4B	Q9H853	241 aa		4.18	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms