RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 NMNAT1Q9HAN9 279 aaPredicted RBP0.17□□□□□ -2.38
VPS50-216ENST00000484954 EML6Q6ZMW3 1958 aa0.17□□□□□ -2.38
VPS50-216ENST00000484954 DOCK3Q8IZD9 2030 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 SCN3AQ9NY46 2000 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 DOCK5Q9H7D0 1870 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 NCOA1Q15788 1441 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 PCLOQ9Y6V0 5065 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 KIF13BQ9NQT8 1826 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 A0A087WSZ3 146 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 A8MWV9 139 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 NCR3O14931 201 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 DNAL4O96015 105 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 PRH1P02810 166 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 KRTAP2-3P0C7H8 128 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 CAPZBP47756 277 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 DSCR4P56555 118 aaPredicted RBP0.16□□□□□ -2.38
VPS50-216ENST00000484954 FADDQ13158 208 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 PATE2Q6UY27 113 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 GOLT1AQ6ZVE7 132 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 S100A7AQ86SG5 101 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 OR10X1Q8NGY0 326 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 GNPDA2Q8TDQ7 276 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 ITFG2Q969R8 447 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 DGCR14Q96DF8 476 aaKnown RBP0.16□□□□□ -2.38
VPS50-216ENST00000484954 LYSMD1Q96S90 227 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 KIFC1Q9BW19 673 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 CCDC94Q9BW85 323 aaPredicted RBP0.16□□□□□ -2.38
VPS50-216ENST00000484954 KRTAP2-4Q9BYR9 128 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 KRTAP2-1Q9BYU5 128 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 IMUPQ9GZP8 106 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 C10orf95Q9H7T3 257 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 PSTPIP2Q9H939 334 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 ASB4Q9Y574 426 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 LAMB4A4D0S4 1761 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 MUC2Q02817 5179 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 RTL1A6NKG5 1358 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 RFX7Q2KHR2 1363 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 SYNE2Q8WXH0 6885 aaKnown RBP0.16□□□□□ -2.38
VPS50-216ENST00000484954 RIMBP3CA6NJZ7 1639 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 RIMBP3BA6NNM3 1639 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 RIMBP3Q9UFD9 1639 aa0.16□□□□□ -2.38
VPS50-216ENST00000484954 ARHGEF28Q8N1W1 1705 aaKnown RBP0.16□□□□□ -2.38
VPS50-216ENST00000484954 LAMA4Q16363 1823 aa0.15□□□□□ -2.38
VPS50-216ENST00000484954 APCP25054 2843 aa0.15□□□□□ -2.38
VPS50-216ENST00000484954 NEBP20929 6669 aa0.15□□□□□ -2.38
VPS50-216ENST00000484954 ANKHD1Q8IWZ3 2542 aaKnown RBP0.15□□□□□ -2.39
VPS50-216ENST00000484954 TRGV10A0A0A0MS01 117 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 TRAV10A0A0B4J240 114 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 A0A0D9SG42 100 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 NDUFB3O43676 98 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 IFNA6P05013 189 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 HSPE1P61604 102 aaKnown RBP0.15□□□□□ -2.39
VPS50-216ENST00000484954 AKIRIN2Q53H80 203 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 FAM74A1Q5RGS3 127 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 LYRM7Q5U5X0 104 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 GKN2Q86XP6 184 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 ST6GALNAC3Q8NDV1 305 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 TMEM254Q8TBM7 123 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 ZC2HC1AQ96GY0 325 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 TEX37Q96LM6 180 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 TP53RKQ96S44 253 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 SLC25A21Q9BQT8 299 aaPredicted RBP0.15□□□□□ -2.39
VPS50-216ENST00000484954 C9orf16Q9BUW7 83 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 ORMDL1Q9P0S3 153 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 TMEM14CQ9P0S9 112 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 PCTPQ9UKL6 214 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 UNC13CQ8NB66 2214 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 EML5Q05BV3 1969 aa0.15□□□□□ -2.39
VPS50-216ENST00000484954 FMN1Q68DA7 1419 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 KIAA1549Q9HCM3 1950 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 FSIP2Q5CZC0 6907 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 A0A1W2PPM0 123 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 TMEM210A6NLX4 147 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 TMEM256-PLSCR3K7ERE1 68 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 S100A6P06703 90 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 HLA-EP13747 358 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 HSD11B1P28845 292 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 INSL3P51460 131 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 DYNLT3P51808 116 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 LIN52Q52LA3 116 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 GLIPR1L1Q6UWM5 242 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 CANT1Q8WVQ1 401 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 BTF3L4Q96K17 158 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 YPEL2Q96QA6 119 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 LINC00467Q9BRT7 94 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 NPCDR1Q9BY65 106 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 ENY2Q9NPA8 101 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 ARMC1Q9NVT9 282 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 OPTCQ9UBM4 332 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 FAM32AQ9Y421 112 aaKnown RBP0.14□□□□□ -2.39
VPS50-216ENST00000484954 LY96Q9Y6Y9 160 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 CEP192Q8TEP8 1941 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 DSTQ03001 7570 aaKnown RBP0.14□□□□□ -2.39
VPS50-216ENST00000484954 ASCC3Q8N3C0 2202 aaKnown RBP0.14□□□□□ -2.39
VPS50-216ENST00000484954 ZNF462Q96JM2 2506 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 MCM3APO60318 1980 aa0.14□□□□□ -2.39
VPS50-216ENST00000484954 SSPOA2VEC9 5147 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 ADGRL3Q9HAR2 1447 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 TET1Q8NFU7 2136 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 OR2T8A6NH00 312 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms