RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 A0A1B0GV50 99 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 CPSF4LA6NMK7 179 aaKnown RBP3.81□□□□□ -1.8
VPS13A-207ENST00000419472 EPM2AB3EWF7 344 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 PFN2P35080 140 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 OR1Q1Q15612 314 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 MSMO1Q15800 293 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 C4orf26Q17RF5 130 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 TBC1D28Q2M2D7 210 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 BVES-AS1Q5T3Y7 98 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 XP32Q5T750 250 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 GTF2H5Q6ZYL4 71 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 DOLPP1Q86YN1 238 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 SGPP2Q8IWX5 399 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 OR2T10Q8NGZ9 312 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 SLC25A40Q8TBP6 338 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 GALMQ96C23 342 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 RNF185Q96GF1 192 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 GPR82Q96P67 336 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 SMIM3Q9BZL3 60 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 MRPL16Q9NX20 251 aaKnown RBP3.81□□□□□ -1.8
VPS13A-207ENST00000419472 ERG28Q9UKR5 140 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 HHLA2Q9UM44 414 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 F11RQ9Y624 299 aaKnown RBP3.81□□□□□ -1.8
VPS13A-207ENST00000419472 DSPP15924 2871 aaKnown RBP3.81□□□□□ -1.8
VPS13A-207ENST00000419472 IGLV7-46A0A075B6I9 117 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 IGHV7-81A0A0B4J1V7 117 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 A6NDN8 102 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 REG1AP05451 166 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 IGKV2-30P06310 120 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 DGAT2L6Q6ZPD8 337 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 SHISA6Q6ZSJ9 500 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 OOSP2Q86WS3 158 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 BTF3L4Q96K17 158 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 Q9H3A6 140 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 PRORYQ9H606 182 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 DPM3Q9P2X0 92 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 KLK13Q9UKR3 277 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 UFC1Q9Y3C8 167 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 TRAPPC1Q9Y5R8 145 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 PTPRBP23467 1997 aa3.81□□□□□ -1.8
VPS13A-207ENST00000419472 SPENQ96T58 3664 aaKnown RBP3.81□□□□□ -1.8
VPS13A-207ENST00000419472 COL27A1Q8IZC6 1860 aaPredicted RBP3.81□□□□□ -1.8
VPS13A-207ENST00000419472 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 IGHV5-51A0A0C4DH38 117 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 CEACAM18A8MTB9 384 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 EPPINO95925 133 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 MRPL3P09001 348 aaKnown RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 CPMP14384 443 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 SRSF6Q13247 344 aaKnown RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 EIF3IQ13347 325 aaKnown RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 LRRC25Q8N386 305 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 BLNKQ8WV28 456 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF391Q9UJN7 358 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 BOKQ9UMX3 212 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 TRAV1-1A0A0B4J248 108 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 A0A0J9YY10 115 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 TINCRA0A1B0GVN0 87 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 M0R1X1 148 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 GPX1P07203 203 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 GUCA1AP43080 201 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 PRR4Q16378 134 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 SPATA31B1PQ5VZV4 182 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 FOXI2Q6ZQN5 318 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF584Q8IVC4 421 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 SLC25A45Q8N413 288 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 SMIM20Q8N5G0 67 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF418Q8TF45 676 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 GTSF1Q8WW33 167 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 GPR84Q9NQS5 396 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 MGAQ8IWI9 3026 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 CHD3Q12873 2000 aaKnown RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 ABCA2Q9BZC7 2435 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 RTTNQ86VV8 2226 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 A0A1B0GX78 115 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 LINC01619G3V211 115 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 K7EP34 96 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 SERF1AO75920 110 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 S1PR2O95136 353 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 IGLV1-44P01699 117 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 LHX2P50458 406 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 KRTDAPP60985 99 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 LCN6P62502 163 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 SUPT4H1P63272 117 aaKnown RBP3.8□□□□□ -1.8
VPS13A-207ENST00000419472 Q0VG73 95 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 PMCHL1Q16048 86 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 Q499Y3 187 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 MPV17L2Q567V2 206 aa3.8□□□□□ -1.8
VPS13A-207ENST00000419472 COL12A1Q99715 3063 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 DPRXA6NFQ7 191 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 J3QT63 122 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 SLC17A3O00476 420 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF138P52744 262 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 HIST1H1AQ02539 215 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 CYP2G1PQ6ZSU1 146 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 SIGLECL1Q8N7X8 197 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 OR4A5Q8NH83 315 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 OR51I2Q9H344 312 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 GNB4Q9HAV0 340 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 AK3Q9UIJ7 227 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 TRAPPC2LQ9UL33 140 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms