RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SRSF1Q07955 248 aaKnown RBP eCLIP8.28□□□□□ -1.08
COL6A3-205ENST00000392004 KLHL30-AS1Q8NEE0 82 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 WFDC12Q8WWY7 111 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 VPS25Q9BRG1 176 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 SAMD10Q9BYL1 202 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 SMG1Q96Q15 3661 aaKnown RBP8.28□□□□□ -1.08
COL6A3-205ENST00000392004 TRAV41A0A0B4J266 112 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 TMEM183BQ1AE95 376 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 C12orf54Q6X4T0 127 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 VAMP8Q9BV40 100 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 A0A0G2JRQ6 117 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 C15orf65H3BRN8 121 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 CIDEAO60543 219 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 LY6G6DO95868 133 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 MFAP4P55083 255 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 KAAG1Q9UBP8 84 aa8.28□□□□□ -1.08
COL6A3-205ENST00000392004 C15orf32Q32M92 178 aa8.27□□□□□ -1.08
COL6A3-205ENST00000392004 TEPPQ6URK8 271 aa8.27□□□□□ -1.08
COL6A3-205ENST00000392004 AURKAIP1Q9NWT8 199 aaPredicted RBP8.27□□□□□ -1.08
COL6A3-205ENST00000392004 C21orf62Q9NYP8 219 aa8.27□□□□□ -1.08
COL6A3-205ENST00000392004 POLR3KQ9Y2Y1 108 aaPredicted RBP8.27□□□□□ -1.08
COL6A3-205ENST00000392004 UPK2O00526 184 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 ATP6V0E1O15342 81 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 HOXB4P17483 251 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-205ENST00000392004 CSN1S1P47710 185 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 UBE2L3P68036 154 aaKnown RBP8.27□□□□□ -1.09
COL6A3-205ENST00000392004 UHRF2Q96PU4 802 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 TCF21O43680 179 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 DEFB136Q30KP8 78 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 MINOS1Q5TGZ0 78 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 Q6ZRM9 215 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 BAGE3Q86Y29 109 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 BAGE2Q86Y30 109 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 Q8N7P7 452 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 DAZAP1Q96EP5 407 aaKnown RBP8.27□□□□□ -1.09
COL6A3-205ENST00000392004 MINOS1-NBL1R4GNA1 71 aa8.27□□□□□ -1.09
COL6A3-205ENST00000392004 C11orf94C9JXX5 98 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 AMY1AP04745 511 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 ARL16Q0P5N6 197 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 OR5I1Q13606 314 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 PRSS8Q16651 343 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 FAM106AQ4KMX7 169 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 C11orf71Q6IPW1 123 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 OR1L4Q8NGR5 311 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 RITA1Q96K30 269 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 PAM16Q9Y3D7 125 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 IGKV1-5P01602 117 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 GATA3P23771 443 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 ATP6V1FQ16864 119 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 TMEM30BQ3MIR4 351 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 DEFB121Q5J5C9 76 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 Q6ZS49 121 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 RPP25LQ8N5L8 163 aaKnown RBP8.26□□□□□ -1.09
COL6A3-205ENST00000392004 OR4F17Q8NGA8 305 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 OR5AU1Q8NGC0 362 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 SRRM4A7MD48 611 aaKnown RBP8.26□□□□□ -1.09
COL6A3-205ENST00000392004 F6UZH7 168 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 PAFAH1B2P68402 229 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 RPL19P84098 196 aaKnown RBP8.26□□□□□ -1.09
COL6A3-205ENST00000392004 NDPQ00604 133 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 MIEN1Q9BRT3 115 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 TEX50A0A1B0GTY4 177 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 TYMSP04818 313 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 LINC00614P0C842 121 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 ARL3P36405 182 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 TAS2R45P59539 299 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 UBE2G1P62253 170 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 SRSF7Q16629 238 aaKnown RBP eCLIP8.26□□□□□ -1.09
COL6A3-205ENST00000392004 MRPL52Q86TS9 123 aaKnown RBP8.26□□□□□ -1.09
COL6A3-205ENST00000392004 TMEM256Q8N2U0 113 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-205ENST00000392004 OR5B3Q8NH48 314 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 GRAMD2BQ96HH9 432 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 NPVFQ9HCQ7 196 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 KCNIP2Q9NS61 270 aa8.26□□□□□ -1.09
COL6A3-205ENST00000392004 IGHV4-31P0DP07 118 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 PIP4P2Q8N4L2 257 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 SGMS2Q8NHU3 365 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 IMMP2LQ96T52 175 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 KIR2DL5BA0A0G2JN68 375 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 KIR2DL5BA0A0G2JPC4 375 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 SLC25A5P05141 298 aaKnown RBP8.25□□□□□ -1.09
COL6A3-205ENST00000392004 ZNF90Q03938 601 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 COL5A1-AS1Q5SY13 56 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 DMRTA1Q5VZB9 504 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 KIR2DL5AQ8N109 375 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 GATAD1Q8WUU5 269 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 NPSP0C0P6 89 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 IGFBP2P18065 325 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 C10orf113Q5VZT2 155 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 TNFRSF14Q92956 283 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 EEF1AKMT3Q96AZ1 226 aa8.25□□□□□ -1.09
COL6A3-205ENST00000392004 HSBP1L1C9JCN9 74 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 AVPP01185 164 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 CRISP2P16562 243 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 CDC34P49427 236 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-205ENST00000392004 GAGE1Q13065 139 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 TIGITQ495A1 244 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 Q6ZPA2 131 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 SMIM15Q7Z3B0 74 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms