RNA–Protein interactions for RNA: ENST00000301019.8

CDT1-201, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDT1, Length 3,240 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-201ENST00000301019 MED13Q9UHV7 2174 aa11.67□□□□□ -0.54
CDT1-201ENST00000301019 GTSCR1Q86UQ5 136 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 ZNRF1Q8ND25 227 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 SRSF12Q8WXF0 261 aaKnown RBP11.66□□□□□ -0.54
CDT1-201ENST00000301019 RPP21Q9H633 154 aaKnown RBP11.66□□□□□ -0.54
CDT1-201ENST00000301019 TRBV6-6A0A0A6YYG2 114 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 PINLYPA6NC86 204 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 OR2J3O76001 311 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 C10orf55Q5SWW7 151 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 COLCA1Q6ZS62 124 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 RTL8AQ9BWD3 113 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 SPANXB1Q9NS25 103 aaPredicted RBP11.66□□□□□ -0.54
CDT1-201ENST00000301019 SMPXQ9UHP9 88 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 NCKAP5O14513 1909 aa11.66□□□□□ -0.54
CDT1-201ENST00000301019 OOEPA6NGQ2 149 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 REG1BP48304 166 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 TMEM249Q2WGJ8 235 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 PEAR1Q5VY43 1037 aaPredicted RBP11.65□□□□□ -0.54
CDT1-201ENST00000301019 ZNF329Q86UD4 541 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 MED13LQ71F56 2210 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 IGLV3-32A0A0A0MS00 114 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 KIR2DL2P43627 348 aaPredicted RBP11.65□□□□□ -0.54
CDT1-201ENST00000301019 C3orf36Q3SXR2 165 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 INO80CQ6PI98 192 aaPredicted RBP11.65□□□□□ -0.54
CDT1-201ENST00000301019 NPIPB3Q92617 1050 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 LINC01548A6NM66 108 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 CFIP05156 583 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 MAGEA5P43359 124 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 CHCHD1Q96BP2 118 aaKnown RBP11.65□□□□□ -0.54
CDT1-201ENST00000301019 ABHD17AQ96GS6 310 aa11.65□□□□□ -0.54
CDT1-201ENST00000301019 CACNA1HO95180 2353 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 NPIPB11E5RHQ5 1161 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 IGKV1-16P04430 117 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 CSN1S1P47710 185 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 HERV-K104P63124 156 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 MDP1Q86V88 176 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 RBMXL3Q8N7X1 1067 aaKnown RBP11.64□□□□□ -0.55
CDT1-201ENST00000301019 ADAMTS20P59510 1910 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 J3QR89 54 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 GUSBP11Q6P575 273 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 A0A1B0GXF2 115 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 FAM90A27PA6NNH2 459 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 DEFB108BQ8NET1 73 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 ITLN1Q8WWA0 313 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 DDB2Q92466 427 aa11.64□□□□□ -0.55
CDT1-201ENST00000301019 TTC28Q96AY4 2481 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 D6R8Y8 96 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 C16orf97H3BN30 126 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 KRTAP27-1Q3LI81 207 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 LINC00305Q7Z4B0 112 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 WIPF2Q8TF74 440 aaPredicted RBP11.63□□□□□ -0.55
CDT1-201ENST00000301019 ZNF414Q96IQ9 312 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 PATE3B3GLJ2 98 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 SCGB2A1O75556 95 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 EIF4EBP1Q13541 118 aaPredicted RBP11.63□□□□□ -0.55
CDT1-201ENST00000301019 CR1LQ2VPA4 569 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 C10orf113Q5VZT2 155 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 EXOC3-AS1Q8N2X6 119 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 SMIM20Q8N5G0 67 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 MRAP2Q96G30 205 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 ZNF479Q96JC4 524 aa11.63□□□□□ -0.55
CDT1-201ENST00000301019 RALYQ9UKM9 306 aaKnown RBP11.63□□□□□ -0.55
CDT1-201ENST00000301019 TRBV20-1A0A075B6N2 111 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 FKBP2P26885 142 aaKnown RBP11.62□□□□□ -0.55
CDT1-201ENST00000301019 PDPNQ86YL7 162 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 FAM167A-AS1Q96KT0 104 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 DMXL1Q9Y485 3027 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 TMEM213A2RRL7 107 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 CT45A6P0DMU7 189 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 CT45A5P0DMU8 189 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 CT45A7P0DMV0 189 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 MPV17P39210 176 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 HSPE1P61604 102 aaKnown RBP11.62□□□□□ -0.55
CDT1-201ENST00000301019 LPAL2Q16609 132 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 CT45A1Q5HYN5 189 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 CT45A3Q8NHU0 189 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 SAP25Q8TEE9 199 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 UFC1Q9Y3C8 167 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 APOMO95445 188 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 PRSS1P07477 247 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 SP1P08047 785 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 B3GALT5-AS1P59052 145 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 RUSC1-AS1Q66K80 236 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 AMN1Q8IY45 258 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 BOD1L2Q8IYS8 172 aa11.62□□□□□ -0.55
CDT1-201ENST00000301019 OSR1Q8TAX0 266 aaPredicted RBP11.62□□□□□ -0.55
CDT1-201ENST00000301019 ZZEF1O43149 2961 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 CNOT1A5YKK6 2376 aaKnown RBP11.61□□□□□ -0.55
CDT1-201ENST00000301019 GOLT1AQ6ZVE7 132 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 ZBTB34Q8NCN2 500 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 MRPL36Q9P0J6 103 aaKnown RBP11.61□□□□□ -0.55
CDT1-201ENST00000301019 PRR33A8MZF0 331 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 E7EUB6 86 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 NPIPB6E9PJ23 425 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 PRRG2O14669 202 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 LYZL6O75951 148 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 SMIM17P0DL12 118 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 RBPMS2Q6ZRY4 209 aaKnown RBP11.61□□□□□ -0.55
CDT1-201ENST00000301019 TMEM178AQ8NBL3 297 aa11.61□□□□□ -0.55
CDT1-201ENST00000301019 DUSP23Q9BVJ7 150 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms