RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SERTAD4Q9NUC0 356 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 NSD1Q96L73 2696 aaPredicted RBP15.59■□□□□ 0.09
CLN3-250ENST00000636839 TRAV1-1A0A0B4J248 108 aa15.59■□□□□ 0.09
CLN3-250ENST00000636839 OR5G3P0C626 314 aa15.59■□□□□ 0.09
CLN3-250ENST00000636839 FOSL1P15407 271 aa15.59■□□□□ 0.09
CLN3-250ENST00000636839 RAB9AP51151 201 aa15.59■□□□□ 0.09
CLN3-250ENST00000636839 SRSF2Q01130 221 aaKnown RBP15.59■□□□□ 0.09
CLN3-250ENST00000636839 HAGHQ16775 308 aa15.59■□□□□ 0.09
CLN3-250ENST00000636839 IL34Q6ZMJ4 242 aa15.59■□□□□ 0.09
CLN3-250ENST00000636839 Q6ZSV7 163 aa15.59■□□□□ 0.09
CLN3-250ENST00000636839 PPP5D1E7EU14 171 aa15.58■□□□□ 0.09
CLN3-250ENST00000636839 TRBV12-3P01733 135 aa15.58■□□□□ 0.09
CLN3-250ENST00000636839 LYZP61626 148 aa15.58■□□□□ 0.09
CLN3-250ENST00000636839 IQCF2Q8IXL9 164 aa15.58■□□□□ 0.09
CLN3-250ENST00000636839 Q8N2B8 174 aa15.58■□□□□ 0.09
CLN3-250ENST00000636839 PBDC1Q9BVG4 233 aa15.58■□□□□ 0.09
CLN3-250ENST00000636839 COX7A2P2O60397 106 aa15.58■□□□□ 0.08
CLN3-250ENST00000636839 RHOBP62745 196 aa15.58■□□□□ 0.08
CLN3-250ENST00000636839 TOR2AQ5JU69 321 aa15.58■□□□□ 0.08
CLN3-250ENST00000636839 HIST2H2BDQ6DRA6 164 aa15.58■□□□□ 0.08
CLN3-250ENST00000636839 OR51G1Q8NGK1 321 aa15.58■□□□□ 0.08
CLN3-250ENST00000636839 EEF1AKMT3Q96AZ1 226 aa15.58■□□□□ 0.08
CLN3-250ENST00000636839 GNG13Q9P2W3 67 aa15.58■□□□□ 0.08
CLN3-250ENST00000636839 F8P00451 2351 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 FAM223BA6NKX1 122 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 TSPAN9O75954 239 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 IGHG4P01861 327 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 ARL14EPLP0DKL9 152 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 PSMB8P28062 276 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 C10orf113Q5VZT2 155 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 FAM223AQ8IWN6 122 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 OR5B12Q96R08 314 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 ZNF580Q9UK33 172 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 FUT9Q9Y231 359 aa15.57■□□□□ 0.08
CLN3-250ENST00000636839 FCGR2BP31994 310 aaPredicted RBP15.56■□□□□ 0.08
CLN3-250ENST00000636839 GUK1Q16774 197 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 LEMD1Q68G75 181 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 ZNF491Q8N8L2 437 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 TXN2Q99757 166 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 RAB19A4D1S5 217 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 I3L521 148 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 TOMM40O96008 361 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 HBE1P02100 147 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 IL4P05112 153 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 SNRPCP09234 159 aaKnown RBP15.56■□□□□ 0.08
CLN3-250ENST00000636839 STAG3L2P0CL84 134 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 STAG3L3P0CL85 134 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 LINC00305Q7Z4B0 112 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 EIF4E3Q8N5X7 224 aaKnown RBP15.56■□□□□ 0.08
CLN3-250ENST00000636839 ZNF503Q96F45 646 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 EIF5A2Q9GZV4 153 aaKnown RBP15.56■□□□□ 0.08
CLN3-250ENST00000636839 GNB4Q9HAV0 340 aa15.56■□□□□ 0.08
CLN3-250ENST00000636839 TRAV30A0A087WSZ9 112 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 TRBV7-1A0A0A6YYK4 115 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 H3BUA1 57 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 CLDN34H7C241 214 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 HYPMO75409 117 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 RPLP1P05386 114 aaKnown RBP15.55■□□□□ 0.08
CLN3-250ENST00000636839 HILS1P60008 231 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 YPEL3P61236 119 aaPredicted RBP15.55■□□□□ 0.08
CLN3-250ENST00000636839 KIAA0141Q14154 515 aaPredicted RBP15.55■□□□□ 0.08
CLN3-250ENST00000636839 ZNF418Q8TF45 676 aaPredicted RBP15.55■□□□□ 0.08
CLN3-250ENST00000636839 PUS1Q9Y606 427 aaKnown RBP eCLIP15.55■□□□□ 0.08
CLN3-250ENST00000636839 ANKRD34BA5PLL1 514 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 NUPL2O15504 423 aaKnown RBP15.55■□□□□ 0.08
CLN3-250ENST00000636839 BRI3O95415 125 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 USF2Q15853 346 aaPredicted RBP15.55■□□□□ 0.08
CLN3-250ENST00000636839 FAM167A-AS1Q96KT0 104 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 SLC25A2Q9BXI2 301 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 TREM1Q9NP99 234 aa15.55■□□□□ 0.08
CLN3-250ENST00000636839 RBFOX3A6NFN3 312 aa15.54■□□□□ 0.08
CLN3-250ENST00000636839 RNASE1P07998 156 aaKnown RBP15.54■□□□□ 0.08
CLN3-250ENST00000636839 SCGB2A2Q13296 93 aa15.54■□□□□ 0.08
CLN3-250ENST00000636839 LINC00052Q96N35 136 aa15.54■□□□□ 0.08
CLN3-250ENST00000636839 WI2-2373I1.2A0A1W2PRP0 233 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 TGOLN2O43493 480 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 CD5P06127 495 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 PLP1P60201 277 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 OR1L4Q8NGR5 311 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 RNF125Q96EQ8 232 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 NARS2Q96I59 477 aaKnown RBP15.53■□□□□ 0.08
CLN3-250ENST00000636839 NUDT19A8MXV4 375 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 OR10J4P0C629 311 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 COMMD1Q8N668 190 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 OR4X2Q8NGF9 303 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 Q8WTZ3 238 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 USMG5Q96IX5 58 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 PFDN5Q99471 154 aa15.53■□□□□ 0.08
CLN3-250ENST00000636839 MRPL27Q9P0M9 148 aaKnown RBP15.53■□□□□ 0.08
CLN3-250ENST00000636839 HSPB1P04792 205 aaKnown RBP15.52■□□□□ 0.08
CLN3-250ENST00000636839 UBE2G2P60604 165 aa15.52■□□□□ 0.08
CLN3-250ENST00000636839 ICAM4Q14773 271 aa15.52■□□□□ 0.08
CLN3-250ENST00000636839 TEX38Q6PEX7 206 aa15.52■□□□□ 0.08
CLN3-250ENST00000636839 RXFP4Q8TDU9 374 aa15.52■□□□□ 0.08
CLN3-250ENST00000636839 C19orf24Q9BVV8 132 aa15.52■□□□□ 0.08
CLN3-250ENST00000636839 ELOA3CA0A087WX78 387 aaPredicted RBP15.51■□□□□ 0.07
CLN3-250ENST00000636839 C8orf88P0DMB2 117 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 PYYP10082 97 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 GCHFRP30047 84 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 TOMM20LQ6UXN7 152 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms