RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 F6UB75 175 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 CDS2O95674 445 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 APOA1P02647 267 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 IL4P05112 153 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 RD3LP0DJH9 198 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 SLC25A4P12235 298 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 PGAM2P15259 253 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 RCVRNP35243 200 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 HOXA1P49639 335 aaPredicted RBP4.28□□□□□ -1.72
VRK3-220ENST00000600259 AKR1C2P52895 323 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 FOXI2Q6ZQN5 318 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 SNX29P2Q8IUI4 249 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 C6orf223Q8N319 242 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 OR51G1Q8NGK1 321 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 RNASEH2CQ8TDP1 164 aaKnown RBP4.28□□□□□ -1.72
VRK3-220ENST00000600259 GPR146Q96CH1 333 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 VCX3BQ9H321 246 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 SCRT2Q9NQ03 307 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.28□□□□□ -1.72
VRK3-220ENST00000600259 KLK11Q9UBX7 282 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 DMBT1Q9UGM3 2413 aaPredicted RBP4.28□□□□□ -1.72
VRK3-220ENST00000600259 A0A0J9YX75 114 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 LOC102723971A0A1B0GUV8 181 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 PLAC8L1A1L4L8 177 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 CRXO43186 299 aaPredicted RBP4.27□□□□□ -1.73
VRK3-220ENST00000600259 ATG12O94817 140 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 CD3DP04234 171 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 HTN3P15516 51 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 RORCP51449 518 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 KRTAP10-2P60368 255 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 PSG9Q00887 426 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 NEDD8Q15843 81 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 RRN3P1Q2M238 152 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 NMSQ5H8A3 153 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 FAM78BQ5VT40 261 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 SPATA31B1PQ5VZV4 182 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 FAM219AQ8IW50 185 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 SELENOHQ8IZQ5 122 aaKnown RBP4.27□□□□□ -1.73
VRK3-220ENST00000600259 C15orf53Q8NAA6 179 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 OR4B1Q8NGF8 309 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 OR4D10Q8NGI6 311 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 TERB2Q8NHR7 220 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 RRNAD1Q96FB5 475 aaKnown RBP4.27□□□□□ -1.73
VRK3-220ENST00000600259 C20orf173Q96LM9 149 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 LINC00052Q96N35 136 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 RTBDNQ9BSG5 229 aaPredicted RBP4.27□□□□□ -1.73
VRK3-220ENST00000600259 PDCD10Q9BUL8 212 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 TMEM222Q9H0R3 208 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 ENY2Q9NPA8 101 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 HEYLQ9NQ87 328 aaPredicted RBP4.27□□□□□ -1.73
VRK3-220ENST00000600259 COMMD3Q9UBI1 195 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 LINC00588Q9Y4M8 146 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 SRRM2Q9UQ35 2752 aaKnown RBP4.27□□□□□ -1.73
VRK3-220ENST00000600259 VPS13BQ7Z7G8 4022 aa4.27□□□□□ -1.73
VRK3-220ENST00000600259 TEX13DA0A0J9YY54 714 aaPredicted RBP4.26□□□□□ -1.73
VRK3-220ENST00000600259 ZNF705GA8MUZ8 300 aaPredicted RBP4.26□□□□□ -1.73
VRK3-220ENST00000600259 GSTZ1O43708 216 aaPredicted RBP4.26□□□□□ -1.73
VRK3-220ENST00000600259 HPGDSO60760 199 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 SCGB2A1O75556 95 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 HBE1P02100 147 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 AZU1P20160 251 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 ALDH3B2P48448 385 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 PSMB3P49720 205 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 DAD1P61803 113 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 LSM3P62310 102 aaKnown RBP4.26□□□□□ -1.73
VRK3-220ENST00000600259 ZNF90Q03938 601 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 GAMTQ14353 236 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 MEF2DQ14814 521 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 FCN2Q15485 313 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 TRIM16LQ309B1 348 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 RNASE10Q5GAN6 216 aaKnown RBP4.26□□□□□ -1.73
VRK3-220ENST00000600259 C1orf194Q5T5A4 169 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 OR8G2PQ6IF36 304 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 ARRDC1Q8N5I2 433 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 SLC24A4Q8NFF2 622 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 OR13C8Q8NGS7 320 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 OR52I2Q8NH67 350 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 ZFAND1Q8TCF1 268 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 MARCH1Q8TCQ1 289 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 RNF125Q96EQ8 232 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 ACY3Q96HD9 319 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 IGF2BP2-AS1Q96M15 143 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 ABHD1Q96SE0 405 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 KRTAP1-5Q9BYS1 174 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 MTFP1Q9UDX5 166 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 CACNG5Q9UF02 275 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 GOLT1BQ9Y3E0 138 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 TMEM56-RWDD3S4R434 201 aa4.26□□□□□ -1.73
VRK3-220ENST00000600259 MYCBP2O75592 4640 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 IGKV1OR2-108A0A075B7D4 117 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 SMIM31A0A1B0GVY4 71 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 LYRM9A8MSI8 78 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 CEBPZOSA8MTT3 80 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 ISLRO14498 428 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 B3GALNT1O75752 331 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 OR5AC1P0C628 307 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 TBPP20226 339 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 BTF3P20290 206 aaKnown RBP4.25□□□□□ -1.73
VRK3-220ENST00000600259 TSPOP30536 169 aa4.25□□□□□ -1.73
VRK3-220ENST00000600259 GPX4P36969 197 aaPredicted RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms