RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 YPEL3P61236 119 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-239ENST00000545694 GNB1P62873 340 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 CX3CL1P78423 397 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 SSBP2P81877 361 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-239ENST00000545694 LOXL1Q08397 574 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-239ENST00000545694 TMEM241Q24JQ0 296 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 CLEC12BQ2HXU8 276 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 C10orf55Q5SWW7 151 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 FAM78BQ5VT40 261 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 C10orf113Q5VZT2 155 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 FAM90A2PQ658T7 463 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 OR4F5Q8NH21 305 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 OR2T6Q8NHC8 308 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 SGMS2Q8NHU3 365 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 VN1R17PQ8TDU5 208 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 NPIPB3Q92617 1050 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 C11orf52Q96A22 123 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 ACY3Q96HD9 319 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 AJUBAQ96IF1 538 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 OR4F4Q96R69 305 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 SMIM7Q9BQ49 75 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 SDF2L1Q9HCN8 221 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 RPS10P5Q9NQ39 176 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF580Q9UK33 172 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 MOB4Q9Y3A3 225 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 PUS1Q9Y606 427 aaKnown RBP eCLIP4.9□□□□□ -1.63
SYNE1-239ENST00000545694 IGLV11-55A0A075B6I3 123 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 IGKV1D-37A0A075B6S9 117 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 IGHV4-30-2A0A087WSY4 118 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 C9JCJ5 164 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 FCN1O00602 326 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 TSPAN4O14817 238 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 PAGE4O60829 102 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 HYPMO75409 117 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 S100A9P06702 114 aaKnown RBP4.89□□□□□ -1.63
SYNE1-239ENST00000545694 MFAP4P55083 255 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 DLX1P56177 255 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 SRSF1Q07955 248 aaKnown RBP eCLIP4.89□□□□□ -1.63
SYNE1-239ENST00000545694 AKIRIN2Q53H80 203 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 FAM209BQ5JX69 171 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 CST9LP1Q5W188 147 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 IQCF2Q8IXL9 164 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 Q8N9W7 124 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 OR51G1Q8NGK1 321 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 FAM110DQ8TAY7 271 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-239ENST00000545694 ANAPC16Q96DE5 110 aa4.89□□□□□ -1.63
SYNE1-239ENST00000545694 RBM14Q96PK6 669 aaKnown RBP4.89□□□□□ -1.63
SYNE1-239ENST00000545694 SEPSECSQ9HD40 501 aaKnown RBP4.89□□□□□ -1.63
SYNE1-239ENST00000545694 POLQO75417 2590 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 IGHV7-81A0A0B4J1V7 117 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 FAM74A7A6NL05 159 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 H3BUA1 57 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 CLDN34H7C241 214 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 K7EIM0 57 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 OR7C2O60412 319 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 TOMM40O96008 361 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 IGLC1P0CG04 106 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 RNF224P0DH78 156 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 RAB9AP51151 201 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 MFAP2P55001 183 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 ANKRD39Q53RE8 183 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 GCSAMLQ5JQS6 135 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 DYNAPQ8N1N2 210 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 ARL6IP6Q8N6S5 226 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 TMEM37Q8WXS4 190 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 SMIM12Q96EX1 92 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 IMMP2LQ96T52 175 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 PAXXQ9BUH6 204 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 PARLQ9H300 379 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 OR51M1Q9H341 326 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 TMEM14CQ9P0S9 112 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 HIGD1AQ9Y241 93 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 APCP25054 2843 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 CELSR2Q9HCU4 2923 aa4.88□□□□□ -1.63
SYNE1-239ENST00000545694 COLCA2A8K830 154 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 J3QKU1 62 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 GNG7O60262 68 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 NDUFB8O95169 186 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 OR2C1O95371 312 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 REG1AP05451 166 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 RD3LP0DJH9 198 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 CEBPGP53567 150 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 TAS2R60P59551 318 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 UBE2L3P68036 154 aaKnown RBP4.87□□□□□ -1.63
SYNE1-239ENST00000545694 RPL19P84098 196 aaKnown RBP4.87□□□□□ -1.63
SYNE1-239ENST00000545694 FLI1Q01543 452 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-239ENST00000545694 DEFB113Q30KQ7 82 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 TMEM88Q6PEY1 159 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 C9orf139Q6ZV77 190 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 MIR17HGQ75NE6 70 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 LINC00305Q7Z4B0 112 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 LYPD1Q8N2G4 141 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 C5orf56Q8N8D9 126 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-239ENST00000545694 NECAP1Q8NC96 275 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 OR5AU1Q8NGC0 362 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 OR5R1Q8NH85 324 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 Q8WTZ3 238 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 HIST1H2BAQ96A08 127 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 FAM167A-AS1Q96KT0 104 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms