RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 ZNF695Q8IW36 515 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 NECAP1Q8NC96 275 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 OR4X2Q8NGF9 303 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 SGMS2Q8NHU3 365 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 RNASE11Q8TAA1 199 aaKnown RBP3.97□□□□□ -1.77
CLIP1-217ENST00000543205 TMEM167AQ8TBQ9 72 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 TSC22D3Q99576 134 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 FAM103A1Q9BTL3 118 aaKnown RBP3.97□□□□□ -1.77
CLIP1-217ENST00000543205 TMEM222Q9H0R3 208 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 ZNF430Q9H8G1 570 aaPredicted RBP3.97□□□□□ -1.77
CLIP1-217ENST00000543205 WSB1Q9Y6I7 421 aa3.97□□□□□ -1.77
CLIP1-217ENST00000543205 PIGBOS1A0A0B4J2F0 54 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 MSGN1A6NI15 193 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 UPK2O00526 184 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 HSBP1O75506 76 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 RBMXL2O75526 392 aaKnown RBP3.96□□□□□ -1.78
CLIP1-217ENST00000543205 OXTP01178 125 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 CD28P10747 220 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 CTRB1P17538 263 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 AKR1C2P52895 323 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 KRTAP10-3P60369 221 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 SRPXP78539 464 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 NDPQ00604 133 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 SRSF4Q08170 494 aaKnown RBP3.96□□□□□ -1.78
CLIP1-217ENST00000543205 POU2AF1Q16633 256 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 CTRB2Q6GPI1 263 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 ZNF329Q86UD4 541 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 SLC25A42Q86VD7 318 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 MAPKAPK5-AS1Q8N8E1 139 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 LFNGQ8NES3 379 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 SRSF12Q8WXF0 261 aaKnown RBP3.96□□□□□ -1.78
CLIP1-217ENST00000543205 LINC00476Q8WZB0 136 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 TMEM230Q96A57 120 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 GALNT14Q96FL9 552 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 SEC22AQ96IW7 307 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 RSG1Q9BU20 258 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 COMMD5Q9GZQ3 224 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 ZNF580Q9UK33 172 aa3.96□□□□□ -1.78
CLIP1-217ENST00000543205 TRAV3A0A0B4J244 114 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 TCRBV4S1A1TA0A5B7 111 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 G3V318 75 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 SFT2D2O95562 160 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 CDS2O95674 445 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 IGKV1-39P01597 117 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 IGKV1D-39P04432 117 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 TCRBP04435 133 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 PET100P0DJ07 73 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 SLC6A1P30531 599 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 RPL27AP46776 148 aaKnown RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 CEBPGP53567 150 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 RAB25P57735 213 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 IFITM3Q01628 133 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 PPP1R1AQ13522 171 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 TMEM187Q14656 261 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 MRGPRG-AS1Q2M3A8 158 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 AKIRIN2Q53H80 203 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 C10orf99Q6UWK7 81 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 LGI3Q8N145 548 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 CASTOR1Q8WTX7 329 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 PHLDA1Q8WV24 401 aaPredicted RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 RBPMSQ93062 196 aaKnown RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 IL22RA2Q969J5 263 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 SPIN2AQ99865 258 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 SPIN2BQ9BPZ2 258 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 ACTR3CQ9C0K3 210 aaPredicted RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 C20orf85Q9H1P6 137 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 ZNF355PQ9NSJ1 428 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 FKBP11Q9NYL4 201 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 PRNDQ9UKY0 176 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 FBXO7Q9Y3I1 522 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 OR51B2Q9Y5P1 312 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 NUBP2Q9Y5Y2 271 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 PKD1L1Q8TDX9 2849 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 IGKV1-5P01602 117 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 HLA-AP01891 365 aaKnown RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 FGF2P09038 288 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 OR4E1P0C645 316 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 OR9G9P0C7N8 305 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 APELAP0DMC3 54 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 CRIP2P52943 208 aaPredicted RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 OR2B8PP59922 312 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 SUPT4H1P63272 117 aaKnown RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 SSBP2P81877 361 aaPredicted RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 C10orf55Q5SWW7 151 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 S100A7AQ86SG5 101 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 ZFP82Q8N141 532 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 OR1L8Q8NGR8 309 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 LYPD6BQ8NI32 183 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 MRAPQ8TCY5 172 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 RNASEH2CQ8TDP1 164 aaKnown RBP3.95□□□□□ -1.78
CLIP1-217ENST00000543205 TMEM56Q96MV1 263 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 PDCD10Q9BUL8 212 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 TMEM56-RWDD3S4R434 201 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 TGP01266 2768 aa3.95□□□□□ -1.78
CLIP1-217ENST00000543205 MEGF8Q7Z7M0 2845 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 A0A0B4J2A0 478 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 TEX50A0A1B0GTY4 177 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 C9orf170A2RU37 121 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 C15orf61A6NNL5 157 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 SNURFLB1AK76 121 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms