RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 KLF2Q9Y5W3 355 aaPredicted RBP7.73□□□□□ -1.17
PTPRB-204ENST00000538708 ATP6V0E1O15342 81 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 SLC25A39Q9BZJ4 359 aaPredicted RBP7.73□□□□□ -1.17
PTPRB-204ENST00000538708 F5H768 121 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 PSG1P11464 419 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 FOXA3P55318 350 aaPredicted RBP7.73□□□□□ -1.17
PTPRB-204ENST00000538708 TRAV5A0A0B4J249 113 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 SLC25A20O43772 301 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 EFNB3Q15768 340 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 ZNF414Q96IQ9 312 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 SCRT1Q9BWW7 348 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 IL36BQ9NZH7 164 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 ASCC3Q8N3C0 2202 aaKnown RBP7.73□□□□□ -1.17
PTPRB-204ENST00000538708 TRAV8-6A0A0B4J262 113 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 K7EM74 188 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 ATP5LO75964 103 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 TRGC2P03986 189 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 DEFB131AP59861 70 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 CKS1BP61024 79 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 DMRTC2Q8IXT2 367 aaPredicted RBP7.72□□□□□ -1.17
PTPRB-204ENST00000538708 OR11H1Q8NG94 326 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 SEPSECSQ9HD40 501 aaKnown RBP7.72□□□□□ -1.17
PTPRB-204ENST00000538708 Q6P435 159 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 MPTX1A8MV57 137 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 CA1P00915 261 aaPredicted RBP7.72□□□□□ -1.17
PTPRB-204ENST00000538708 SRRM4A7MD48 611 aaKnown RBP7.72□□□□□ -1.17
PTPRB-204ENST00000538708 F8VVB4 439 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 F8VWA3 439 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 RPL36AP83881 106 aaKnown RBP7.72□□□□□ -1.17
PTPRB-204ENST00000538708 GFI1BQ5VTD9 330 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 C9orf139Q6ZV77 190 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 Q8TCH9 128 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 RPL36ALQ969Q0 106 aaKnown RBP7.72□□□□□ -1.17
PTPRB-204ENST00000538708 CACNA1CQ13936 2221 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 TRAV3A0A0B4J244 114 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 SHISA3A0PJX4 238 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 CGB3P0DN86 165 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 FAM215AQ9Y5M1 114 aa7.72□□□□□ -1.17
PTPRB-204ENST00000538708 WDR81Q562E7 1941 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 PMS2P5A8MQ11 134 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.71□□□□□ -1.17
PTPRB-204ENST00000538708 CFHR3Q02985 330 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 ZNF506Q5JVG8 444 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 ORMDL3Q8N138 153 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 FAM89BQ8N5H3 189 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 NUDT11Q96G61 164 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 EVI2AP22794 236 aa7.71□□□□□ -1.17
PTPRB-204ENST00000538708 KNL1Q8NG31 2342 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 NUP214P35658 2090 aaPredicted RBP7.71□□□□□ -1.18
PTPRB-204ENST00000538708 C5orf63A6NC05 138 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 IZUMO1RA6ND01 250 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 TOMM40O96008 361 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 GRNP28799 593 aaKnown RBP7.71□□□□□ -1.18
PTPRB-204ENST00000538708 NHLRC3Q5JS37 347 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 OR11H2Q8NH07 326 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 COQ2Q96H96 371 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 JKAMPQ9P055 326 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 PMCHL1Q16048 86 aa7.71□□□□□ -1.18
PTPRB-204ENST00000538708 RLFQ13129 1914 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 CBLN1P23435 193 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 TRGV9Q99603 122 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 TSSC4Q9Y5U2 329 aaPredicted RBP7.7□□□□□ -1.18
PTPRB-204ENST00000538708 SRSF1Q07955 248 aaKnown RBP eCLIP7.7□□□□□ -1.18
PTPRB-204ENST00000538708 IGFL4Q6B9Z1 124 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 NRN1Q9NPD7 142 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 IGKV1D-8A0A087WSZ0 117 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 NPIPB5A8MRT5 1133 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 HIGD1CA8MV81 97 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 TDGF1P3P51864 188 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 SUPT4H1P63272 117 aaKnown RBP7.7□□□□□ -1.18
PTPRB-204ENST00000538708 LAIR2Q6ISS4 152 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 MST1LQ2TV78 715 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 FAM120AOSQ5T036 256 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 LINC00477Q96M19 166 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 XCL2Q9UBD3 114 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 FBLN5Q9UBX5 448 aa7.7□□□□□ -1.18
PTPRB-204ENST00000538708 EXOC3-AS1Q8N2X6 119 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 SLX1AQ9BQ83 275 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 WT1P19544 449 aaPredicted RBP7.69□□□□□ -1.18
PTPRB-204ENST00000538708 IGF2-ASQ6U949 168 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 RNASE7Q9H1E1 156 aaKnown RBP7.69□□□□□ -1.18
PTPRB-204ENST00000538708 ZNRD1Q9P1U0 126 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 F2Z2F3 143 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 J3QRE1 110 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 ZNF138P52744 262 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 PROK2Q9HC23 129 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 NLRC5Q86WI3 1866 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 TSC2P49815 1807 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 FOXL2NBQ6ZUU3 175 aa7.69□□□□□ -1.18
PTPRB-204ENST00000538708 SOD3P08294 240 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 IFITM3Q01628 133 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 DEFB112Q30KQ8 113 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 S100A7L2Q5SY68 101 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 FABP2P12104 132 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 LINC00158P58513 81 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 ZNF362Q5T0B9 420 aaPredicted RBP7.68□□□□□ -1.18
PTPRB-204ENST00000538708 ATOH7Q8N100 152 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 OR5A1Q8NGJ0 315 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 DEFB104AQ8WTQ1 72 aa7.68□□□□□ -1.18
PTPRB-204ENST00000538708 CYSLTR1Q9Y271 337 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms