RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 H3BNG1 76 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 ZNF701M0R085 212 aaPredicted RBP4.33□□□□□ -1.72
CD44-237ENST00000534082 ATP5HO75947 161 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 TMEM50AO95807 157 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 INSP01308 110 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 ALPLP05186 524 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 AZU1P20160 251 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 CALB2P22676 271 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 TSPAN5P62079 268 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 CATR1Q13166 79 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 SMN1Q16637 294 aaKnown RBP4.33□□□□□ -1.72
CD44-237ENST00000534082 LELP1Q5T871 98 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 FAM78BQ5VT40 261 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 TPRA1Q86W33 373 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 Q8N814 137 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 ZNF485Q8NCK3 441 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 SECTM1Q8WVN6 248 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 APH1BQ8WW43 257 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 TMEM230Q96A57 120 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 ABHD1Q96SE0 405 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 PLEKHA2Q9HB19 425 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 MSRB1Q9NZV6 116 aa4.33□□□□□ -1.72
CD44-237ENST00000534082 DIMT1Q9UNQ2 313 aaKnown RBP4.33□□□□□ -1.72
CD44-237ENST00000534082 FSIP2Q5CZC0 6907 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 LRCOL1A6NCL2 159 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 F6UB75 175 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 SLC17A2O00624 439 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 EI24O14681 340 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 SNAPC5O75971 98 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 CTXN2P0C2S0 81 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 FCGR1AP12314 374 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 HIST1H1DP16402 221 aaKnown RBP4.32□□□□□ -1.72
CD44-237ENST00000534082 DTYMKP23919 212 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 GADD45AP24522 165 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 HNRNPA3P51991 378 aaKnown RBP4.32□□□□□ -1.72
CD44-237ENST00000534082 PAX9P55771 341 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 CLDN12P56749 244 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 RAB14P61106 215 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 MSMO1Q15800 293 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 RAB11BQ15907 218 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 RGS21Q2M5E4 152 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 HSD17B12Q53GQ0 312 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 SPATA31B1PQ5VZV4 182 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 SIGLEC15Q6ZMC9 328 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 CLVS1Q8IUQ0 354 aaPredicted RBP4.32□□□□□ -1.72
CD44-237ENST00000534082 OR10J6PQ8NGY7 276 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 OR51H1Q8NH63 302 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 COQ8AQ8NI60 647 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 CCL28Q9NRJ3 127 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 MRPL36Q9P0J6 103 aaKnown RBP4.32□□□□□ -1.72
CD44-237ENST00000534082 PRNDQ9UKY0 176 aa4.32□□□□□ -1.72
CD44-237ENST00000534082 TRAV9-2A0A087WT02 112 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 A0A096LPF7 62 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 A0A0J9YX75 114 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 IRGMA1A4Y4 181 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 PSCAO43653 123 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 SCGB2A1O75556 95 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 CD1AP06126 327 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 PSMB3P49720 205 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 AADACL3Q5VUY0 350 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 EBLN2Q6P2I7 272 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 AMTNQ6UX39 209 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 TMED4Q7Z7H5 227 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 BPIFB6Q8NFQ5 453 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 OR10R2Q8NGX6 335 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 FAM3DQ96BQ1 224 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 CENPNQ96H22 339 aaPredicted RBP4.31□□□□□ -1.72
CD44-237ENST00000534082 GFI1Q99684 422 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 NOP10Q9NPE3 64 aaKnown RBP4.31□□□□□ -1.72
CD44-237ENST00000534082 NUDT15Q9NV35 164 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 ELF5Q9UKW6 265 aaPredicted RBP4.31□□□□□ -1.72
CD44-237ENST00000534082 AP4S1Q9Y587 144 aa4.31□□□□□ -1.72
CD44-237ENST00000534082 TIMM8BQ9Y5J9 83 aaPredicted RBP4.31□□□□□ -1.72
CD44-237ENST00000534082 TMEM272A0A1B0GTI8 110 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 PGPEP1LA6NFU8 196 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 A8MTW9 85 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 M0R2Z0 102 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 CRXO43186 299 aaPredicted RBP4.3□□□□□ -1.72
CD44-237ENST00000534082 GATCO43716 136 aaKnown RBP4.3□□□□□ -1.72
CD44-237ENST00000534082 WBP4O75554 376 aaKnown RBP4.3□□□□□ -1.72
CD44-237ENST00000534082 ADAP1O75689 374 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 KRASP01116 189 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 IGKV1-17P01599 117 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 G6PCP35575 357 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 ID1P41134 155 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 RPP30P78346 268 aaKnown RBP4.3□□□□□ -1.72
CD44-237ENST00000534082 SPINK13Q1W4C9 94 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 C2orf76Q3KRA6 126 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 TIGITQ495A1 244 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 CNIH2Q6PI25 160 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 BAP18Q8IXM2 172 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 ZBTB34Q8NCN2 500 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 LGALS14Q8TCE9 139 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 TMEM203Q969S6 136 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 GPR146Q96CH1 333 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 SLC7A6OSQ96CW6 309 aaPredicted RBP4.3□□□□□ -1.72
CD44-237ENST00000534082 C16orf74Q96GX8 76 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 LINC00467Q9BRT7 94 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 VCX3AQ9NNX9 186 aa4.3□□□□□ -1.72
CD44-237ENST00000534082 RHBDL2Q9NX52 303 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms