RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PTHLHP12272 177 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 PGAM2P15259 253 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 RPA2P15927 270 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 SPNP16150 400 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 PRSS3P35030 304 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 RPL27AP46776 148 aaKnown RBP2.61□□□□□ -1.99
NUP54-212ENST00000513248 ALDH3B2P48448 385 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 SYNJ2BPP57105 145 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 VBP1P61758 197 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 RHOGP84095 191 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 DEFA5Q01523 94 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 PJVKQ0ZLH3 352 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 EXOSC2Q13868 293 aaKnown RBP2.61□□□□□ -1.99
NUP54-212ENST00000513248 PRSS8Q16651 343 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 GUCA2BQ16661 112 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 Q6ZS49 121 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 FAM223AQ8IWN6 122 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 SGPP2Q8IWX5 399 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 CMTM1Q8IZ96 169 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 VKORC1L1Q8N0U8 176 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 MINDY2Q8NBR6 621 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 OR51H1Q8NH63 302 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 RNASE11Q8TAA1 199 aaKnown RBP2.61□□□□□ -1.99
NUP54-212ENST00000513248 CD300LFQ8TDQ1 290 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 SRSF12Q8WXF0 261 aaKnown RBP2.61□□□□□ -1.99
NUP54-212ENST00000513248 AP3S1Q92572 193 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 EEF1AKMT3Q96AZ1 226 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 USMG5Q96IX5 58 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 OR2A7Q96R45 310 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 ZNF2Q9BSG1 426 aaPredicted RBP2.61□□□□□ -1.99
NUP54-212ENST00000513248 COMMD5Q9GZQ3 224 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 TOLLIPQ9H0E2 274 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 AUNIPQ9H7T9 357 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 TUBA4BQ9H853 241 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 ZNF430Q9H8G1 570 aaPredicted RBP2.61□□□□□ -1.99
NUP54-212ENST00000513248 PALMDQ9NP74 551 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 HYDINQ4G0P3 5121 aa2.61□□□□□ -1.99
NUP54-212ENST00000513248 IGKV1D-13A0A0B4J2D9 117 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 MFSD2BA6NFX1 497 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 CCDC160A6NGH7 325 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 FBLL1A6NHQ2 334 aaKnown RBP2.6□□□□□ -1.99
NUP54-212ENST00000513248 SSX5O60225 188 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 GGCTO75223 188 aaKnown RBP2.6□□□□□ -1.99
NUP54-212ENST00000513248 HPRT1P00492 218 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 KRASP01116 189 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 IGLV2-23P01705 113 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 IGHV3-23P01764 117 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 HLA-DQB1P01920 261 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 REG1AP05451 166 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 IGKV1-13P0DP09 117 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 NQO2P16083 231 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 HIST1H1BP16401 226 aaKnown RBP2.6□□□□□ -1.99
NUP54-212ENST00000513248 HLA-GP17693 338 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 HLA-DMAP28067 261 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 RCVRNP35243 200 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 MAS1LP35410 378 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 TGFBR1P36897 503 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 LPAR6P43657 344 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 RORCP51449 518 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 TAS2R20P59543 309 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 NCS1P62166 190 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 RPL30P62888 115 aaKnown RBP2.6□□□□□ -1.99
NUP54-212ENST00000513248 RPL8P62917 257 aaKnown RBP2.6□□□□□ -1.99
NUP54-212ENST00000513248 RUNX1Q01196 453 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 EGFEM1PQ0D2K5 195 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 C10orf55Q5SWW7 151 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 LCN12Q6JVE5 192 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 SLC25A24Q6NUK1 477 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 LPCAT3Q6P1A2 487 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 CLEC19AQ6UXS0 136 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 NECAP1Q8NC96 275 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 OR9G4Q8NGQ1 327 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 OR4A5Q8NH83 315 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 VN1R17PQ8TDU5 208 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 SLC25A38Q96DW6 304 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 YIPF6Q96EC8 236 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 VSIG2Q96IQ7 327 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 B9D2Q9BPU9 175 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 PDCD10Q9BUL8 212 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 NDUFA13Q9P0J0 144 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 CELA1Q9UNI1 258 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 ZNF257Q9Y2Q1 563 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 STRAPQ9Y3F4 350 aaKnown RBP2.6□□□□□ -1.99
NUP54-212ENST00000513248 S4R3C0 116 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 U3KQK5 164 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 SVEP1Q4LDE5 3571 aa2.6□□□□□ -1.99
NUP54-212ENST00000513248 PCLOQ9Y6V0 5065 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 PPP5D1E7EU14 171 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 GPR31O00270 319 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 UPK2O00526 184 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 HPGDSO60760 199 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 PGLYRP1O75594 196 aaPredicted RBP2.59□□□□□ -1.99
NUP54-212ENST00000513248 ATG12O94817 140 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 S1PR2O95136 353 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 DUSP14O95147 198 aaKnown RBP2.59□□□□□ -1.99
NUP54-212ENST00000513248 APOA1P02647 267 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 EIF4EP06730 217 aaKnown RBP2.59□□□□□ -1.99
NUP54-212ENST00000513248 SERPINE2P07093 398 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 CRYGBP07316 175 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 TRAPPC2P0DI81 140 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms