RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 NCKAP5O14513 1909 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 ABCC3O15438 1527 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 EFCAB6Q5THR3 1501 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 ASXL1Q8IXJ9 1541 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 ROCK1Q13464 1354 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 CDK5RAP2Q96SN8 1893 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 UNC13BO14795 1591 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 MAST1Q9Y2H9 1570 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 IGKV1D-42A0A075B6H8 117 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 C1orf196B1AJZ1 125 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 OVOL1O14753 267 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 HMGB3O15347 200 aaKnown RBP1.61□□□□□ -2.15
USP53-204ENST00000507906 ORC5O43913 435 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 OR2B3O76000 313 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 IFNA10P01566 189 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 ERP29P30040 261 aaKnown RBP1.61□□□□□ -2.15
USP53-204ENST00000507906 FXYD2P54710 66 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 HSPE1P61604 102 aaKnown RBP1.61□□□□□ -2.15
USP53-204ENST00000507906 KRR1Q13601 381 aaKnown RBP1.61□□□□□ -2.15
USP53-204ENST00000507906 NNATQ16517 81 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 LCN15Q6UWW0 184 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 SIGLECL1Q8N7X8 197 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 GNPDA2Q8TDQ7 276 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 DOHHQ9BU89 302 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 STOML2Q9UJZ1 356 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 MYH3P11055 1940 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 ZFHX2Q9C0A1 2572 aaPredicted RBP1.61□□□□□ -2.15
USP53-204ENST00000507906 STRCQ7RTU9 1775 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 ADGRL2O95490 1459 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 CFTRP13569 1480 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 NRXN1Q9ULB1 1477 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 PSME4Q14997 1843 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 KIF13BQ9NQT8 1826 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 ABCC6O95255 1503 aa1.61□□□□□ -2.15
USP53-204ENST00000507906 TANC1Q9C0D5 1861 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 XRN1Q8IZH2 1706 aaKnown RBP1.6□□□□□ -2.15
USP53-204ENST00000507906 GREB1Q4ZG55 1949 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 RGS12O14924 1447 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 CPSF1Q10570 1443 aaKnown RBP1.6□□□□□ -2.15
USP53-204ENST00000507906 MROH1Q8NDA8 1641 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 ZNF860A6NHJ4 632 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 GPX2P18283 190 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 RHOBP62745 196 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 RPL19P84098 196 aaKnown RBP1.6□□□□□ -2.15
USP53-204ENST00000507906 ZNF345Q14585 488 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 ARHGAP11BQ3KRB8 267 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 Q6ZQT0 140 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 C7orf65Q6ZTY9 151 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 HIST3H2BBQ8N257 126 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 TMEM86AQ8N2M4 240 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 C11orf40Q8WZ69 217 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 TMEM106AQ96A25 262 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 GPR146Q96CH1 333 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 PRRT1Q99946 306 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 FAM107BQ9H098 131 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 TMEM133Q9H2Q1 129 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 SLC39A9Q9NUM3 307 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 TVP23BQ9NYZ1 205 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 UTP11Q9Y3A2 253 aaKnown RBP1.6□□□□□ -2.15
USP53-204ENST00000507906 LHFPL6Q9Y693 200 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 SPEF2Q9C093 1822 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 IFT140Q96RY7 1462 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 FAM208AQ9UK61 1670 aaKnown RBP1.6□□□□□ -2.15
USP53-204ENST00000507906 MUC19Q7Z5P9 8384 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 C4AP0C0L4 1744 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 C4BP0C0L5 1744 aa1.6□□□□□ -2.15
USP53-204ENST00000507906 DIP2AQ14689 1571 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 TTC37Q6PGP7 1564 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 LAMB1P07942 1786 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 ANKRD36CQ5JPF3 1778 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 BCL9O00512 1426 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 DAPK1P53355 1430 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 PPIP5K1Q6PFW1 1433 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 ERBINQ96RT1 1412 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 CDK12Q9NYV4 1490 aaPredicted RBP1.59□□□□□ -2.15
USP53-204ENST00000507906 SULT1B1O43704 296 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 CTSDP07339 412 aaPredicted RBP1.59□□□□□ -2.15
USP53-204ENST00000507906 NFYAP23511 347 aaPredicted RBP1.59□□□□□ -2.15
USP53-204ENST00000507906 FKBP2P26885 142 aaKnown RBP1.59□□□□□ -2.15
USP53-204ENST00000507906 PIGPP57054 158 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 DHFR2Q86XF0 187 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 SMIM20Q8N5G0 67 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 OR5A1Q8NGJ0 315 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 STAG3L4Q8TBR4 150 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 GID8Q9NWU2 228 aa1.59□□□□□ -2.15
USP53-204ENST00000507906 MYO9BQ13459 2157 aa1.59□□□□□ -2.16
USP53-204ENST00000507906 CDK13Q14004 1512 aaKnown RBP1.59□□□□□ -2.16
USP53-204ENST00000507906 DUOX2Q9NRD8 1548 aa1.59□□□□□ -2.16
USP53-204ENST00000507906 ADGRB1O14514 1584 aa1.59□□□□□ -2.16
USP53-204ENST00000507906 CDC42BPGQ6DT37 1551 aa1.59□□□□□ -2.16
USP53-204ENST00000507906 BICRAQ9NZM4 1560 aa1.59□□□□□ -2.16
USP53-204ENST00000507906 ICE1Q9Y2F5 2266 aa1.59□□□□□ -2.16
USP53-204ENST00000507906 KIF1BO60333 1816 aa1.59□□□□□ -2.16
USP53-204ENST00000507906 AFDNP55196 1824 aaKnown RBP1.59□□□□□ -2.16
USP53-204ENST00000507906 ABCC5O15440 1437 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 FAM135BQ49AJ0 1406 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 PIK3C2AO00443 1686 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 CLTCQ00610 1675 aaKnown RBP1.58□□□□□ -2.16
USP53-204ENST00000507906 A2MP01023 1474 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 CHD1O14646 1710 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms