RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 FAM223BA6NKX1 122 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 KIR3DS1Q14943 382 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 ACTL10Q5JWF8 245 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 LILRA6Q6PI73 481 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 FAM223AQ8IWN6 122 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 ZNF525Q8N782 197 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 SRXN1Q9BYN0 137 aa6.58□□□□□ -1.36
SYNE1-210ENST00000409694 INTS1Q8N201 2190 aaKnown RBP6.58□□□□□ -1.36
SYNE1-210ENST00000409694 F8W1H4 67 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 PSG1P11464 419 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 PEBP1P30086 187 aaKnown RBP6.57□□□□□ -1.36
SYNE1-210ENST00000409694 GNG5P63218 68 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 TPTE2P1Q5T6R2 138 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 GTSF1LQ9H1H1 148 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 GAGE12BA1L429 117 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 IFITM3Q01628 133 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 D6R8Y8 96 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 ZXDCQ2QGD7 858 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-210ENST00000409694 TMEM133Q9H2Q1 129 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 DTX4Q9Y2E6 619 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 TGIF1Q15583 401 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 GFI1BQ5VTD9 330 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 LYPD1Q8N2G4 141 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 SMRP1Q8NCR6 262 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 LY96Q9Y6Y9 160 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 C5orf67F2Z3F1 127 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 TIMP3P35625 211 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 ZAR1Q86SH2 424 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 C1QTNF5Q9BXJ0 243 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 C12orf77C9JDV5 145 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 LINC00271P0C7V0 271 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 GZMMP51124 257 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 IGHV3-35A0A0C4DH35 117 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 MAJINQ3KP22 176 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 PRIMA1Q86XR5 153 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 GLI3P10071 1580 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 IGHV3OR16-10A0A075B7F0 116 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 IGHG4P01861 327 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 USMG5Q96IX5 58 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 NCR2O95944 276 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 IL17RELQ6ZVW7 336 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 GLMPQ8WWB7 406 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 PPDPFLQ8WWR9 84 aa6.57□□□□□ -1.36
SYNE1-210ENST00000409694 TRGV1A0A0A0MS02 117 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 RAMP1O60894 148 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 SPAARA0A1B0GVQ0 90 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 ZNF497Q6ZNH5 498 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 RNF166Q96A37 237 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-210ENST00000409694 TRAV13-2A0A0B4J235 113 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 SAP30O75446 220 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 C1orf194Q5T5A4 169 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 ADAMTSL5Q6ZMM2 481 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 HIST1H2BLQ99880 126 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 MRPS18CQ9Y3D5 142 aaKnown RBP6.56□□□□□ -1.36
SYNE1-210ENST00000409694 PHF3Q92576 2039 aaKnown RBP6.56□□□□□ -1.36
SYNE1-210ENST00000409694 C9orf139Q6ZV77 190 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 FBLN5Q9UBX5 448 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 DOCK10Q96BY6 2186 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 C17orf98A8MV24 154 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 AMBPP02760 352 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 TEX38Q6PEX7 206 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 HEPN1Q6WQI6 88 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 TRPT1Q86TN4 253 aaKnown RBP6.56□□□□□ -1.36
SYNE1-210ENST00000409694 SPATA25Q9BR10 227 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 IGHV2OR16-5A0A0B4J2B6 119 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 SRSF2Q01130 221 aaKnown RBP6.56□□□□□ -1.36
SYNE1-210ENST00000409694 C9JAW5 83 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 CD33P20138 364 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 EFNB3Q15768 340 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 TRGV9Q99603 122 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 AGMATQ9BSE5 352 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 ZNF138P52744 262 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 LSM4Q9Y4Z0 139 aaKnown RBP6.56□□□□□ -1.36
SYNE1-210ENST00000409694 RNF114Q9Y508 228 aa6.56□□□□□ -1.36
SYNE1-210ENST00000409694 ADAMTSL1Q8N6G6 1762 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 C9orf50Q5SZB4 431 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 MBNL3Q9NUK0 354 aaKnown RBP6.55□□□□□ -1.36
SYNE1-210ENST00000409694 FAM186AA6NE01 2351 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 hADV29S1A0JD25 119 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 TCRAP04437 139 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 UBR3Q6ZT12 1888 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 OR11H6Q8NGC7 330 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 SPATA31B1PQ5VZV4 182 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 RTBDNQ9BSG5 229 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-210ENST00000409694 OOSP1A8MZH6 123 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 NDUFS5O43920 106 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 CSTL1Q9H114 145 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 TRAV1-1A0A0B4J248 108 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 SUPT4H1P63272 117 aaKnown RBP6.55□□□□□ -1.36
SYNE1-210ENST00000409694 IMMP1LQ96LU5 166 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 GPHA2Q96T91 129 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 RNF5Q99942 180 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 PLXND1Q9Y4D7 1925 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 LCTP09848 1927 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 LOC105371267A0A1B0GV96 52 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 PDE6HQ13956 83 aa6.55□□□□□ -1.36
SYNE1-210ENST00000409694 TRBV6-7A0A0A0MS04 114 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 A0A0U1RRA0 63 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 DLEU1O43261 78 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 ZNF876PQ49A33 203 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms