RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 RAB1BQ9H0U4 201 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 OR2D2Q9H210 308 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 RALYQ9UKM9 306 aaKnown RBP8.2□□□□□ -1.1
SYNE1-203ENST00000354674 USF3Q68DE3 2245 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 KIR2DS1A0A191URI9 304 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 CTXND1A0A1B0GTU2 59 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 A0A1B0GW15 77 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 H0YJW9 148 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 PPIFP30405 207 aaKnown RBP8.2□□□□□ -1.1
SYNE1-203ENST00000354674 ECI1P42126 302 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 KIR2DS4P43632 304 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 INSL3P51460 131 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 HBG1P69891 147 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 HBG2P69892 147 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 Q0VG73 95 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 KIR2DS1Q14954 304 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 C12orf54Q6X4T0 127 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 SMIM20Q8N5G0 67 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 NPFFR1Q9GZQ6 430 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 FAM234AQ9H0X4 552 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 IL36BQ9NZH7 164 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 F11RQ9Y624 299 aaKnown RBP8.2□□□□□ -1.1
SYNE1-203ENST00000354674 LRBAP50851 2863 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 A0A1W2PPV4 95 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 TMEM30CPA0ZSE6 113 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 B5MCH6 92 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 CSN3P07498 182 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 PLA2G2AP14555 144 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 GPR183P32249 361 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 CCL17Q92583 94 aa8.2□□□□□ -1.1
SYNE1-203ENST00000354674 IGKV1-6A0A0C4DH72 117 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 A0A0G2JLM5 398 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 NPIPB11E5RHQ5 1161 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 OVOL3O00110 214 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 MGST3O14880 152 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 CD5LO43866 347 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 VENTXO95231 258 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 PRB4P10163 310 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-203ENST00000354674 LGALS4P56470 323 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 RPL31P62899 125 aaKnown RBP8.19□□□□□ -1.1
SYNE1-203ENST00000354674 PDE6DO43924 150 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 APCSP02743 223 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 HIST1H1EP10412 219 aaKnown RBP8.19□□□□□ -1.1
SYNE1-203ENST00000354674 SERF2P84101 59 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 ZNRF1Q8ND25 227 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 PPP1R35Q8TAP8 253 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 RNF183Q96D59 192 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 UBTD1Q9HAC8 227 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 KAAG1Q9UBP8 84 aa8.19□□□□□ -1.1
SYNE1-203ENST00000354674 USP9XQ93008 2570 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-203ENST00000354674 SIVA1O15304 175 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 RAMP3O60896 148 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 SCGB2A1O75556 95 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 ARL14EPLP0DKL9 152 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 ETDBQ3ZM63 59 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 TEX45Q8NA69 505 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 FAM216AQ8WUB2 273 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 ZDHHC16Q969W1 377 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 CITED1Q99966 193 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 DSCAMO60469 2012 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 COL12A1Q99715 3063 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 TUSC2O75896 110 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 CLEC3BP05452 202 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 WFDC2Q14508 124 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 C18orf32Q8TCD1 76 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 SMPXQ9UHP9 88 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 TRAPPC2LQ9UL33 140 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 DCHS2Q6V1P9 2916 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 ICE1Q9Y2F5 2266 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 FCN3O75636 299 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 ODF1Q14990 250 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 DUX4L9Q6RFH8 374 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-203ENST00000354674 ADAMTSL5Q6ZMM2 481 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 PQLC2Q6ZP29 291 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 DEFB108BQ8NET1 73 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 FAM168AQ92567 244 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 SGK494Q96LW2 274 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 CCL13Q99616 98 aa8.18□□□□□ -1.1
SYNE1-203ENST00000354674 CHD6Q8TD26 2715 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 SPTBN1Q01082 2364 aaKnown RBP8.17□□□□□ -1.1
SYNE1-203ENST00000354674 ACTL6BO94805 426 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 CGB3P0DN86 165 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 CGB7P0DN87 165 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 KIR3DS1Q14943 382 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 TMEM136Q6ZRR5 245 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 SSMEM1Q8WWF3 244 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 TMEM70Q9BUB7 260 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 C15orf65H3BRN8 121 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 K7ERJ3 54 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 RRHO14718 337 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 ID1P41134 155 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 TRAT1Q6PIZ9 186 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 ZNF479Q96JC4 524 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 HIF1ANQ9NWT6 349 aa8.17□□□□□ -1.1
SYNE1-203ENST00000354674 LYNX1G3V0Z9 82 aa8.16□□□□□ -1.1
SYNE1-203ENST00000354674 F2RL2O00254 374 aa8.16□□□□□ -1.1
SYNE1-203ENST00000354674 PGLYRP1O75594 196 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-203ENST00000354674 LYNX1P0DP58 116 aa8.16□□□□□ -1.1
SYNE1-203ENST00000354674 MFAP2P55001 183 aa8.16□□□□□ -1.1
SYNE1-203ENST00000354674 UFSP1Q6NVU6 142 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms